View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19896_low_8 (Length: 291)
Name: NF19896_low_8
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19896_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 46052429 - 46052624
Alignment:
| Q |
1 |
tgaaatctttgctttaatacaaagaaagatttatgactgaaatcaagttagaattctgtttttgagttaa----ttcattcattttagaaaacagcaggc |
96 |
Q |
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| T |
46052429 |
tgaaatctttgctttaatacaaagaaagatttatgactgaaatcaagttagaattctgtttttgagttaattaattcattcattttagaaaacagcaggc |
46052528 |
T |
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| Q |
97 |
ctcgtgtctatttctaaagggttggattaatccaacgacacatatacaacaaaaagtgaaaaccagggaatccctttccccatttaaaagaaggtg |
192 |
Q |
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| T |
46052529 |
ctcgtgtctatttctaaagggttggattaatccaacgacacatatacaacaaaaagtgaaaaccagggaatccctttccccatttaaaagaaggtg |
46052624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 46052633 - 46052672
Alignment:
| Q |
215 |
ttatttcgtcaaaaaccctgaaaattggtcatcaatggtt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
46052633 |
ttatttcgtcaaaaaccctgaaaattggtcatcaatggtt |
46052672 |
T |
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