View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19896_low_9 (Length: 271)
Name: NF19896_low_9
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19896_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 23171504 - 23171250
Alignment:
| Q |
1 |
tccatgatgaccccctccatgattagcatcagtcataaaaaccatgttaccaccatgcatggctttaaatccaccatttttcttgtttattttatcatct |
100 |
Q |
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| T |
23171504 |
tccatgatgaccccctccaggattagcatcagtcataaaaaccatgttaccaccttgcatggctttaaatccaccatttttcttgtttattttatcatct |
23171405 |
T |
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| Q |
101 |
cttctcttttcatgtccagagcaaaaattccccatattttgttggcttttgagtcttattttcttgtacagctttaccctttatatacactccatataat |
200 |
Q |
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| T |
23171404 |
cttctcttttcatgtccagagcaaaaattccccatattttgttggcttttgagtcttattttcttgtacagctttaccctttatatatactccatataat |
23171305 |
T |
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| Q |
201 |
tgattagtcaacgatctttttatcttgacaaatataaagtcaaacgaccttgtttg |
256 |
Q |
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| T |
23171304 |
tta-tagtcaacgatcttcttatcttgacaaatataaagtcaaacaaccttgtttg |
23171250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 23178787 - 23178731
Alignment:
| Q |
134 |
atattttgttggcttttgagtcttattttcttgtacagctttaccctttatatacac |
190 |
Q |
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|||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
23178787 |
atatgttgttggcttttgagtcttattttcctgtacaactttaccctttatatacac |
23178731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 23178909 - 23178875
Alignment:
| Q |
1 |
tccatgatgaccccctccatgattagcatcagtca |
35 |
Q |
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| T |
23178909 |
tccatgatgaccccctccaggattagcatcagtca |
23178875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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