View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_high_10 (Length: 442)
Name: NF19897_high_10
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 338
Target Start/End: Complemental strand, 23705867 - 23705549
Alignment:
| Q |
12 |
aaaggatgggtgactaaagtagtgaccttgtgttatccatgtaagcaaaaatcacataatgaggatgcttatgtaatgtaataacctatctaaaccaaca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23705867 |
aaaggatgggtgactaaagtagtgaccttgtgttatccatgtaagtaaaaatcacataatgaggatgcttatgtaatgtaataacctatctaaaccaaca |
23705768 |
T |
|
| Q |
112 |
catctgatcaattctcctaaaccacttttgggtcgagttactgtcttgtggtttgccttctccggcgaactagccgtttctgttacaaatttacaatgcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23705767 |
catctgatcaattctcctaaaccacttttgggtcgagttactgtcttgtggtttgccttctccggcgaactagccgtttctgtt--------acaatgcc |
23705676 |
T |
|
| Q |
212 |
gccgtgtttcggtaattgttgaggtgatggtttgttaagccttacctcttttcaggctcattcaggtaattgttctggttgtttaatgactacgaatttt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
23705675 |
accgtgtttcggtaattgttgaggtgatggtttgttaagccttacctcttttcaggctcaatcaggtaattgttctggttgtttagtgactacgaatttt |
23705576 |
T |
|
| Q |
312 |
gaaatataggtaataactcaagcaaaa |
338 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
23705575 |
taaatataggtaataactcaagcaaaa |
23705549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 226 - 352
Target Start/End: Original strand, 23653181 - 23653310
Alignment:
| Q |
226 |
attgttgaggtgatggtttgttaagccttacctcttttcaggctcattcaggtaattgttctggttgttta-at--gactacgaattttgaaatataggt |
322 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| || ||||||||||||| || |||||| |
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| T |
23653181 |
attgttgtggtgatggtttgttaagccttaccccttttcaggctcaatcaggtaattgttctggtagtttatatcagactacgaattttaaagcataggt |
23653280 |
T |
|
| Q |
323 |
aataactcaagcaaaacaacaaattcgtct |
352 |
Q |
| |
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||||||||||| |||||| |||| |||||| |
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| T |
23653281 |
aataactcaagtaaaacatcaaactcgtct |
23653310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 23620961 - 23621036
Alignment:
| Q |
44 |
ttatccatgtaagcaaaaatcacataatgaggatgcttatgtaatgtaataacctatctaaaccaacacatctgat |
119 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |
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| T |
23620961 |
ttatccatgtaagtaaaaatcacataatgaggatacttatgtaatgtaaaaacctatctataccaacacatctgat |
23621036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 23652306 - 23652381
Alignment:
| Q |
44 |
ttatccatgtaagcaaaaatcacataatgaggatgcttatgtaatgtaataacctatctaaaccaacacatctgat |
119 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |
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| T |
23652306 |
ttatccatgtaagtaaaaatcacataatgaggatacttatgtaatgtaaaaacctatctataccaacacatctgat |
23652381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 23737740 - 23737815
Alignment:
| Q |
44 |
ttatccatgtaagcaaaaatcacataatgaggatgcttatgtaatgtaataacctatctaaaccaacacatctgat |
119 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |
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| T |
23737740 |
ttatccatgtaagtaaaaatcacataatgaggatacttatgtaatgtaaaaacctatctataccaacacatctgat |
23737815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 23622153 - 23622223
Alignment:
| Q |
226 |
attgttgaggtgatggtttgttaagccttacctcttttcaggctcattcaggtaattgttctggttgttta |
296 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |
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| T |
23622153 |
attgttgtggtgatggtttgttaagccttaccccttttcaggctcaatctggtaattgttctggttgttta |
23622223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 52809489 - 52809557
Alignment:
| Q |
39 |
ttgtgttatccatgtaagcaaaaatcacataatgaggatgcttatgtaatgtaataacctatctaaacca |
108 |
Q |
| |
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|||| |||||||| |||| | |||||| |||| |||||| |||||||||||||||||||||||||||||| |
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| T |
52809489 |
ttgtattatccatataagtagaaatcagataa-gaggatacttatgtaatgtaataacctatctaaacca |
52809557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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