View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19897_high_13 (Length: 412)
Name: NF19897_high_13
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 37494207 - 37494585
Alignment:
| Q |
11 |
atgaatctgttaccctttaaatgtcaacaaattattttctttcttacaacaatccttgaaaggtagtactatatatgtgatgtttctccgatcaactgga |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37494207 |
atgaatatgttaccctttaaatgtcaacaaattattttctttcttacaacaatccttgaacggta---ctatatatgtgatgtttctccgatcaactgga |
37494303 |
T |
|
| Q |
111 |
aatccattttctctactcaaatgaagaaatcctccatacaaatgattttttagtaaaagatatgcagtccttttttattcatagcaccgattctttctct |
210 |
Q |
| |
|
||| ||| |||||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37494304 |
aat----tttttctactcaaatgaagaaaaccttcatacaaataattttttagtaaaagatatgtagtccttttttattcatagcaccgattctttctct |
37494399 |
T |
|
| Q |
211 |
caaaatggttacttagtttacaggttttgttcaaacattataggaacattttagagtagttagttaacatattcaaagttttgcatatctatttggtaca |
310 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37494400 |
caaaattgttacttattttacaggttttgttcaaacattataggaacattttagagtagttagttaacatattcaaagttttgcatatctatttgtaaca |
37494499 |
T |
|
| Q |
311 |
tatcccatctgtttacctatttttcttaaatcatgattattgatttcatattgtgttacgggtcatatttgatcccacctaaaaca |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37494500 |
tatcccatctgtttacctatttttcttaaatcatgatcgttgatttcatattgtgttacgggacatatttgatcccacctaaaaca |
37494585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 31742333 - 31742384
Alignment:
| Q |
26 |
tttaaatgtcaacaaattatt--ttctttcttacaacaatccttgaaaggta |
75 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
31742333 |
tttaaatgtcaacaaattattctttctttctcacaagaatccttgaaaggta |
31742384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University