View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_high_15 (Length: 399)
Name: NF19897_high_15
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 6 - 380
Target Start/End: Complemental strand, 47502361 - 47501983
Alignment:
| Q |
6 |
agcagcacagacgtgtgtgttaaggatagcaagagatgcaatggcactagccacaaatggagctccaccgttgaatccactccaacccatccaaagcagt |
105 |
Q |
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| T |
47502361 |
agcagtacacacgtgtgtgttaaggatagcaagagatgcaatggtactagccacaaatggagctccaccgttgaatccactccaacccatccaaagcagt |
47502262 |
T |
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| Q |
106 |
cctgcgcctgcaagcaccattatcatgttatttgttgctgctggaaatgtttccctgtccttgtctgctcgaggacccacctattgatcatacaccatca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47502261 |
cctgcgcctgcaagcaccattatcatgttatttgttgctgctggaaatgtttccctgtccttgtctgctcgaggacccacctattgatcatacaccatca |
47502162 |
T |
|
| Q |
206 |
tcacatgcaaaaagtcagtctttaaaaattaatcaatttaagtacttgttgattttgaaactttaaaataa----cacaagtctataaccacccatatta |
301 |
Q |
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| T |
47502161 |
tcacatgcaaaaagtcagtctttaaaaattaatcaatttaagtacttgttgattttgaaactttaaaataacacacacaagtctataagcacccatatta |
47502062 |
T |
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| Q |
302 |
tcnnnnnnnnnnnnnnnnnnnaaacgccaatattagtagtattttcttctttttactagggtttggatctgggtggacg |
380 |
Q |
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| T |
47502061 |
tcttttctttttcatttttttaaacgccaatattagcagtattttcttctttttactagggtttggatctgggtggacg |
47501983 |
T |
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