View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_high_17 (Length: 382)
Name: NF19897_high_17
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 42784204 - 42784086
Alignment:
| Q |
1 |
tgagagaagaattagccttggtccacttnnnnnnn--tcttgattagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaat |
98 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
42784204 |
tgagagaagaattagccttggtccacttaaaaaaaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaat |
42784105 |
T |
|
| Q |
99 |
ttgtaaccctttaattcct |
117 |
Q |
| |
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||||||||||||||||||| |
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| T |
42784104 |
ttgtaaccctttaattcct |
42784086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 48479731 - 48479808
Alignment:
| Q |
41 |
attagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaatttgtaaccctttaattcctc |
118 |
Q |
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|||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48479731 |
attagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcctc |
48479808 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5595169 - 5595287
Alignment:
| Q |
1 |
tgagagaagaattagccttggtccacttnnnnnnn-tcttgattagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaatt |
99 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |
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| T |
5595169 |
tgagagaagaattagctttggtccacttaaaaaaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatt |
5595268 |
T |
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| Q |
100 |
tgtaaccctttaattcctc |
118 |
Q |
| |
|
||||||||||||||||||| |
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| T |
5595269 |
tgtaaccctttaattcctc |
5595287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5601362 - 5601480
Alignment:
| Q |
1 |
tgagagaagaattagccttggtccacttnnnnnnn-tcttgattagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaatt |
99 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |
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|
| T |
5601362 |
tgagagaagaattagctttggtccacttaaaaaaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatt |
5601461 |
T |
|
| Q |
100 |
tgtaaccctttaattcctc |
118 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
5601462 |
tgtaaccctttaattcctc |
5601480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 2893457 - 2893337
Alignment:
| Q |
1 |
tgagagaagaattagccttggtccacttnnnnnnn---tcttgattagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |
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| T |
2893457 |
tgagagaagaattagccttggtccacttaaaaaaaaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaa |
2893358 |
T |
|
| Q |
98 |
tttgtaaccctttaattcctc |
118 |
Q |
| |
|
|||||||| |||||||||||| |
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|
| T |
2893357 |
tttgtaactctttaattcctc |
2893337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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