View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19897_high_18 (Length: 380)
Name: NF19897_high_18
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 116 - 250
Target Start/End: Original strand, 45808173 - 45808306
Alignment:
| Q |
116 |
aacattgatggaattaagaaccaaaaaagcaactaaagaacaagaaacatgagaaaagcctataaagctaataaactcagaaaagcacttccaatgaatg |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| || |||| |||||| |||||||||||| |||||| | |||| |||||||| |||||| |
|
|
| T |
45808173 |
aacattgatggaattaagtaccaaaaaagcaactaaagaaaaa-aaacttgagaatagcctataaagcaaataaatttagaagagcacttcgggtgaatg |
45808271 |
T |
|
| Q |
216 |
atagttagatcaaattcacatctgcatctgcatag |
250 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||| |
|
|
| T |
45808272 |
aaagttagatgaaattcacatctgcatctgcatag |
45808306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 821767 - 821701
Alignment:
| Q |
2 |
aagaaaatagaaatagaagagtaatgaaaagatttcactactcataagtcatttgcattaaataaaa |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
821767 |
aagaaaatagaaatagaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaa |
821701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 10114621 - 10114789
Alignment:
| Q |
7 |
aatagaaatagaagagtaatgaaaagatttcactactcataagtcatttgcattaaataaaaa---tcattcataattcaagtg-cttgcttggtatcta |
102 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||| |||| | ||||| ||| || |||| ||| |
|
|
| T |
10114621 |
aatagaaatagaagaggagtgaaaagatttcactactcataagtcttttgcattaaaaaaaaaaactcatgaaagattcacgtgactgaagtggtgtctc |
10114720 |
T |
|
| Q |
103 |
ataattcaaaggaaacattga-tggaattaagaaccaaaaaagcaactaaagaacaagaaacatgagaa |
170 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||||||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
10114721 |
ataattcaaaagaaacattgattggaatcaagaaccaaaatagcaactaaagaaaaagatacatgagaa |
10114789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 10114975 - 10115039
Alignment:
| Q |
172 |
agcctataaagctaataaactcagaaaagcacttccaatgaatgatagt--tagatcaaattcac |
234 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
10114975 |
agcctataaacctaataaactcagataagcacttccattgaatgatggttgtagatcaaattcac |
10115039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University