View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_high_2 (Length: 577)
Name: NF19897_high_2
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 241 - 562
Target Start/End: Original strand, 6581953 - 6582274
Alignment:
| Q |
241 |
tattaagttcaactttggaaattcaataaatannnnnnnagccctgatactatatcaatttttggttaatttcctgcgtatatata--gattaaaacact |
338 |
Q |
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| T |
6581953 |
tattaagttcaactttggaaattcaataaatatttttt-agccctgatactatatcaatttttggttaatttcctgcgtatatatatagattaaaacact |
6582051 |
T |
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| Q |
339 |
attcgatgatccacatatataatagtagagnnnnnnnnnnnnnaatctttttgttgctaatatatactagtacagttttattgcacaaattgaatatcat |
438 |
Q |
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| T |
6582052 |
attcgatgatccacatatata-taatagtaagtttttttttttaatctttttggtgctaatatatactagtacagttttattgcacaaattgaatatcat |
6582150 |
T |
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| Q |
439 |
gtgaaatgatttatatgttgctcaatcactttctggatagtcaaagtcatttttaaaagaaggaatatttcaaaaaattataacttggtcaagtaagcta |
538 |
Q |
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| T |
6582151 |
gtgaaatgatttatatgttgctcaatcactttctggatagtcaaagtcatttttaaaagaaggattatttcaaaaaattataacttggtcaagtaagcta |
6582250 |
T |
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| Q |
539 |
attattttttggtttattaattat |
562 |
Q |
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| T |
6582251 |
attattttttggtttattaattat |
6582274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 6581647 - 6581875
Alignment:
| Q |
21 |
tgaccttatactattaataattaatataaggcaaattatgttattcttttgctgagatgttacaattgtatg--acatattttttctattttattttgaa |
118 |
Q |
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| T |
6581647 |
tgaccttatactattaataattaatataaggcaaattatgttattcttttgctgagatgttacaattatatgatatatattttttctattttattttgaa |
6581746 |
T |
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| Q |
119 |
aaactatattctaactcctatctttaaaaagcaaaagtttgtatgtaaggtc----taaaccattaatgtcgatattgctagatggaatatttatcgggg |
214 |
Q |
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| T |
6581747 |
aaactatattctaactcctgtctttaaaaagcaaaagtttttatgtaaggtctacttaaaccagtaatgtcgatattgctagatggaacatttatcgggg |
6581846 |
T |
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| Q |
215 |
tttgaactcaaaaatttacagttgtgtat |
243 |
Q |
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| T |
6581847 |
tttgaactcaataattcacagttgtgtat |
6581875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 447 - 562
Target Start/End: Original strand, 6567642 - 6567758
Alignment:
| Q |
447 |
atttatatgttgctcaatcactttctggatagtcaaagtcatttt-taaaagaaggaatatttcaaaaaattataacttggtcaagtaagctaattattt |
545 |
Q |
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|||| |||||||||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
6567642 |
atttgtatgttgctcaatccctctctccatagtcaaagtcattttttaaaagaaggaatatttcaaaaaattataattaagtcaagtaagctaattattt |
6567741 |
T |
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| Q |
546 |
tttggtttattaattat |
562 |
Q |
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| T |
6567742 |
gttggttcgttaattat |
6567758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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