View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19897_high_24 (Length: 338)
Name: NF19897_high_24
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 81 - 328
Target Start/End: Complemental strand, 37841889 - 37841642
Alignment:
| Q |
81 |
tctatggctacatattatttcgatcccatgtacaatatgtattgacactgacatttattccactaaaacataaattattgtatgtattttatttttgtcc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37841889 |
tctatggctacatattatttcgatcccatgtacaatatgtattgacactgacatttattccactaaaacataaattattgtatgtattttatttctgtcc |
37841790 |
T |
|
| Q |
181 |
caagtagctaggtaaaggtacacttccttgtctacaccctctactgcaaattacaaacactataagcatagaatgatgctgttttctgcatgggaggtat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37841789 |
caagtagctaggtaaaggtacacttccttgtctacaccctctactgcaaattacaaacactataagcatagaatgatgctgttttctgcatgggaggtat |
37841690 |
T |
|
| Q |
281 |
ggcgtggcacatgtactcatcaaatcatcatgcgattctccacctttg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37841689 |
ggcgtggcacatgtactcatcaaatcatcatgcgattctccacctttg |
37841642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 37841936 - 37841906
Alignment:
| Q |
35 |
cagtacagtcatgagtgataaactaaagggg |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37841936 |
cagtacagtcatgagtgataaactaaagggg |
37841906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University