View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_high_31 (Length: 257)
Name: NF19897_high_31
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 806585 - 806825
Alignment:
| Q |
1 |
atgctagggactaaattgatgatggataaacttagggttagggaccaaattgattgtaatatagggactttattgatactaagtggttaaatataaagac |
100 |
Q |
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| T |
806585 |
atgctagggactaaattgatgatggataaacttagggttagggaccaaattaattgtaatatagggactttattgatagtaagtggttaaatataaagac |
806684 |
T |
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| Q |
101 |
ccaacttgacagttttaaagagttagggacctttttgaaattcttataatctcaaggacctatttgaaaatgcactacgaagtcagggacctatttgaga |
200 |
Q |
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| T |
806685 |
ccaacttgacagttttaaagagttagggacctttttgaaattcttataatctcaaggacctatttgaaaatgcactacgaagtcagggacctatttgaga |
806784 |
T |
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| Q |
201 |
gtgctctacaaagtcagggattattttttgatgctatattc |
241 |
Q |
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| T |
806785 |
gttctctacaaagtcagggattattttttgatgctatattc |
806825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 683477 - 683371
Alignment:
| Q |
58 |
aatatagggactttattgatactaagtggttaaatataaagacccaacttgacagttttaaagagttagggacctttttgaaattcttataatctcaagg |
157 |
Q |
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| T |
683477 |
aatataaggacttaattgataataagtggttaaatataagga-tcaacttgacaatttaatagagtcagagacctttttgaaatagtcataatttcaggg |
683379 |
T |
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| Q |
158 |
acctattt |
165 |
Q |
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|||||||| |
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| T |
683378 |
acctattt |
683371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 40304393 - 40304348
Alignment:
| Q |
119 |
agagttagggacctttttgaaattcttataatctcaaggacctatt |
164 |
Q |
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| T |
40304393 |
agagttagggacctttttgaaatactcataatcgcaaggacctatt |
40304348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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