View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_high_35 (Length: 235)
Name: NF19897_high_35
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 45887548 - 45887388
Alignment:
| Q |
43 |
cagaaaaaacaataatagattagtaattaatactacaagaatgagtttgaatagatcaaacaaaaattcaaattcataatgatacggaacaggaatnnnn |
142 |
Q |
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| T |
45887548 |
cagaaaaaacaatactagattagtaattaataccacaagaatgagtttgaatagatcaaacaaaaattcaaattcataatgatacggaacaggaataaaa |
45887449 |
T |
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| Q |
143 |
nnncatagaagtacggcctctgtctggctatatatatcttagaaaattatctcacaccaat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45887448 |
aaagatagaagtacggcctctgtctggctatatatatcttagaaaataatctcacaccaat |
45887388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 45703744 - 45703582
Alignment:
| Q |
43 |
cagaaaaaacaataatagattagtaattaatactacaagaatgagtttgaatagatcaaacaaaaattcaaattcataatga--tacggaacaggaatnn |
140 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45703744 |
cagaaaaaacaatactagattagtaattaataccacaagaatgagtttgaatagatcaaacaaaaattcaaattcataatgatgtacggaacaggaataa |
45703645 |
T |
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| Q |
141 |
nnnnncatagaagtacggcctctgtctggctatatatatcttagaaaattatctcacaccaat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45703644 |
aaaaagatagaagtacggcctctgtctggctatatatatcttagaaaataatctcacaccaat |
45703582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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