View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_high_36 (Length: 234)
Name: NF19897_high_36
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_36 |
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| [»] scaffold1333 (1 HSPs) |
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Alignment Details
Target: scaffold1333 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 1011 - 1160
Alignment:
| Q |
43 |
tactccctttattgtggctaattaattttgattcatattaattttctagttgcaattagtgtttctgtggttaacgtttgattcaggaatgtaaatgaac |
142 |
Q |
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| T |
1011 |
tactcccattattatggctaattaattttaattcatattgatttcctagttgcaattagtatttttgtgcttaacctttgactcaggaatgtaaatgaac |
1110 |
T |
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| Q |
143 |
ttggaactcaaagaggaactatatttattttgtgagattatggaagatga |
192 |
Q |
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| T |
1111 |
ttggaactcaaagaggaactatatttattttgtgagattatggaagatga |
1160 |
T |
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