View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_high_4 (Length: 549)
Name: NF19897_high_4
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 5921260 - 5920732
Alignment:
| Q |
18 |
gtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaag |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5921260 |
gtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcctccgctcaagaaggtttactctcttgtggtgcaagaagaaaa |
5921161 |
T |
|
| Q |
118 |
caataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttct |
217 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5921160 |
caataattctttaccaatttcagtcactgcttcagatgatagtaacatacaattgaatgcttatgaggttaagaaatcacaaggacgtggtaaaggttct |
5921061 |
T |
|
| Q |
218 |
cttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatggccaccctagttt |
317 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
5921060 |
--tttgttcattctcaaaaacctactacgtattgcaccttttgtcacaagactaatcacacaattgatttttgttatcaaaaacatggctaccctagttt |
5920963 |
T |
|
| Q |
318 |
tcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtact |
417 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5920962 |
tcctaagcaacaatcaagaggaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtacc |
5920863 |
T |
|
| Q |
418 |
tgtttgtctccagagcaatatactcaacttgtttcc-ttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgccaccacc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5920862 |
tgtttgtctccagagcaatatactcaacttgtttcctttgctacaacaggcaagtttggtttcctcatcatctctcccttctacttcaaattccaccacc |
5920763 |
T |
|
| Q |
517 |
aaccatgtccaagtcactccttttgtttcta |
547 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
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| T |
5920762 |
aaccatatccaagtcactccttttgtttcta |
5920732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 476
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
419 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
476 |
Q |
| |
|
|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 17118914 - 17118969
Alignment:
| Q |
250 |
tgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
305 |
Q |
| |
|
||||| |||| | |||||| |||||| || |||||||||||||||||||||||||| |
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|
| T |
17118914 |
tgcacattttttaacaagaataatcatactgttgatttttgttatcaaaaacatgg |
17118969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 6340973 - 6341059
Alignment:
| Q |
38 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
124 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
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| T |
6340973 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
6341059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Complemental strand, 20325562 - 20325043
Alignment:
| Q |
18 |
gtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaag |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || || ||||| ||||||||||||||||||||||| |
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| T |
20325562 |
gtttgaatgataattttggagttgttaagactcaagttcttcttcttaatcctcttccacctcttaataaagtttattctcttgtggtgcaagaagaaag |
20325463 |
T |
|
| Q |
118 |
caataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttct |
217 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
20325462 |
caataactctttaccaatttcaatctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcccaaggacgtggtaaagg---- |
20325367 |
T |
|
| Q |
218 |
cttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatggccaccctagttt |
317 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| || |||||||| |
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|
| T |
20325366 |
-ttttgttaattctcaaaaacctaataggtactgcactttttgtcacaaaactaatcacacagttgatttttgttatcaactacatggtcatcctagttt |
20325268 |
T |
|
| Q |
318 |
tcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtact |
417 |
Q |
| |
|
||||||||||||||||| ||| | | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20325267 |
tcctaagcaacaatctaaagtga---ctgcttctcatgagatccctgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtact |
20325171 |
T |
|
| Q |
418 |
tgtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgccaccacca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||| ||| ||||||||||||| ||||||| |
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| T |
20325170 |
agtttgtctccagagcaatatactcaacttgtttccttgctgcagcaggctagtttgatttcctcatcatctcctcctcctacttcaaatgctaccacca |
20325071 |
T |
|
| Q |
518 |
accatgtccaagtcactccttttgtttc |
545 |
Q |
| |
|
| ||||||||| ||||||||||||||| |
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| T |
20325070 |
atcatgtccaaaccactccttttgtttc |
20325043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 16992354 - 16992268
Alignment:
| Q |
38 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
124 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
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|
| T |
16992354 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
16992268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 11923060 - 11923141
Alignment:
| Q |
47 |
actcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt |
128 |
Q |
| |
|
||||||||| | |||||||||||| ||||| | || || |||||||||| ||||| || |||||||||||||||| |||| |
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|
| T |
11923060 |
actcaagttttgcttcttgatcctattccttccctgaacaaggtttacttccttgttgtttaagaagaaagcaataactctt |
11923141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 20485189 - 20485103
Alignment:
| Q |
38 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
124 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
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|
| T |
20485189 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
20485103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 28016002 - 28016088
Alignment:
| Q |
38 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
124 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
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|
| T |
28016002 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
28016088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 15756210 - 15756259
Alignment:
| Q |
256 |
ttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
305 |
Q |
| |
|
||||||||||||||||||||||| | || ||||| |||||||||||||| |
|
|
| T |
15756210 |
ttttgtcacaagactaatcacactttggaattttgctatcaaaaacatgg |
15756259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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