View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_high_8 (Length: 484)
Name: NF19897_high_8
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 10916990 - 10916650
Alignment:
| Q |
11 |
cagagagagatggaaaatgatattttgctattattatgcagccaaaagtttctcacatgtgtgatgacatcaagaacatgaccataccaattagttcaat |
110 |
Q |
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| T |
10916990 |
cagagagagatggaaaatgatattttgctattattatgcagccaaaagtttctcacatgtgtgatgacatcaagaacatgaccataccaattcgttcaat |
10916891 |
T |
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| Q |
111 |
tcttgacactagagtttaggatcatttcaaatatggaaagcttgatgttaaagatgcatacactagcatatcaacctcctttaatagggtttcttgaggc |
210 |
Q |
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| T |
10916890 |
tcttgacactagagtttaggatcatttcaaatatggaaagcttgatgttaaagatgcatacactagcatatcaacctcctttaatagggtttcttgaggc |
10916791 |
T |
|
| Q |
211 |
aaatccatttggtctcatcgcatcccttttgccaagtcattgcattgcttttgtgtagaatatttcataatgtagttgctactaatgataagttgagaaa |
310 |
Q |
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| T |
10916790 |
aaatccatttggtctcatcgcatcccttttgccaagtcattgcattgcttttgtgtagaatatttcataatgtagttgctactaatgataagttgagaaa |
10916691 |
T |
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| Q |
311 |
gagaggtttgagcatgatttcaagttgtttactgatgttct |
351 |
Q |
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| T |
10916690 |
gagaggtttgagtatgatttcaagttgtttactgatgttct |
10916650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 348 - 466
Target Start/End: Complemental strand, 10916615 - 10916497
Alignment:
| Q |
348 |
ttctcaaggcttttgatgtcaaatgtcatcctccttcggcttccaaaataatttaagtcaattggtcatgtccttcttgcaatgcatgaaatgtaacgtt |
447 |
Q |
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| T |
10916615 |
ttctcaaggcttttgatgtcaaatgtcatcctccttcggcttccaaaataatttaagtcaattggtcatgtccctcttgcaatgcatgaaatgtaacgtt |
10916516 |
T |
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| Q |
448 |
gataaagcatctaaaggtt |
466 |
Q |
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| T |
10916515 |
gataaagcatctaaaggtt |
10916497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 13735487 - 13735812
Alignment:
| Q |
16 |
agagatggaaaatgatattttgctattattatgcagccaaaagtttctcacatgtgtgatgacatcaagaacatgaccataccaattagttcaattcttg |
115 |
Q |
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| T |
13735487 |
agagatggaaaatgatattttgctattattatgcagccaaaagtttctgacatgtgtgatgacatcaagaacatgaccataccaattagttcaattcttg |
13735586 |
T |
|
| Q |
116 |
acactagagtttaggatcatttcaaatatggaaagcttgatgttaaagatgcatacactagcata--tcaacctcctttaatagggtttcttgaggcaaa |
213 |
Q |
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| T |
13735587 |
acactagagtttaggatcatttctaatatggaaaacttgattttaaagatgcatacactagcatatgtcaacctcctttaatagggtttcttgaggcaaa |
13735686 |
T |
|
| Q |
214 |
tccatttggtctcatcgcatcccttttgccaagtcattgcattgcttttgtgtagaatatttcataatgtagttgctactaatgataagttgagaaagag |
313 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13735687 |
tccatttggtctcattgcatcccttttgccaagtcattgcattgcttttgtgtagaatatttcataatgtagttgctactaatgataagctgagaaagag |
13735786 |
T |
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| Q |
314 |
aggtttgagcatgatttcaagttgtt |
339 |
Q |
| |
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||||||||| |||||||||||||||| |
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| T |
13735787 |
aggtttgagtatgatttcaagttgtt |
13735812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 15574518 - 15574193
Alignment:
| Q |
16 |
agagatggaaaatgatattttgctattattatgcagccaaaagtttctcacatgtgtgatgacatcaagaacatgaccataccaattagttcaattcttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15574518 |
agagatggaaaatgatattttgctattattatgcagccaaaagtttctgacatgtgtaatgacatcaagaacatgaccataccaattagttcaattcttg |
15574419 |
T |
|
| Q |
116 |
acactagagtttaggatcatttcaaatatggaaagcttgatgttaaagatgcatacactagcata--tcaacctcctttaatagggtttcttgaggcaaa |
213 |
Q |
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||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15574418 |
acactagagtttaggatcatttctaatatggaaaacttgattttaaagatgcatacactagcatatgtcaacctcctttaatagggtttcttgaggcaaa |
15574319 |
T |
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| Q |
214 |
tccatttggtctcatcgcatcccttttgccaagtcattgcattgcttttgtgtagaatatttcataatgtagttgctactaatgataagttgagaaagag |
313 |
Q |
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| T |
15574318 |
tccatttggtctcattgcatcccttttgccaagtcattgcattgcttttgtgtagaatatttcataatgtagttgctactaatgataagctgagaaagag |
15574219 |
T |
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| Q |
314 |
aggtttgagcatgatttcaagttgtt |
339 |
Q |
| |
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| ||||||| |||||||||||||||| |
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| T |
15574218 |
aagtttgagtatgatttcaagttgtt |
15574193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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