View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19897_low_10 (Length: 465)

Name: NF19897_low_10
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19897_low_10
NF19897_low_10
[»] chr6 (3 HSPs)
chr6 (18-455)||(18361129-18361567)
chr6 (223-284)||(25094709-25094770)
chr6 (235-268)||(31650307-31650340)
[»] chr8 (7 HSPs)
chr8 (18-455)||(3017302-3017743)
chr8 (230-284)||(16168305-16168359)
chr8 (223-265)||(26762859-26762901)
chr8 (255-293)||(34338712-34338750)
chr8 (230-267)||(10744257-10744294)
chr8 (236-285)||(39560339-39560388)
chr8 (229-289)||(26819280-26819340)
[»] chr7 (3 HSPs)
chr7 (229-286)||(5376306-5376363)
chr7 (229-289)||(35169971-35170031)
chr7 (231-263)||(46214467-46214499)
[»] chr4 (4 HSPs)
chr4 (223-271)||(18966008-18966056)
chr4 (230-284)||(1132169-1132223)
chr4 (233-278)||(35341536-35341581)
chr4 (232-280)||(37848421-37848469)
[»] chr1 (4 HSPs)
chr1 (229-281)||(14303943-14303995)
chr1 (236-284)||(32102333-32102381)
chr1 (223-268)||(15867621-15867666)
chr1 (236-268)||(40704979-40705011)
[»] chr3 (2 HSPs)
chr3 (218-285)||(38899988-38900055)
chr3 (230-284)||(44009269-44009323)
[»] chr5 (1 HSPs)
chr5 (231-293)||(7705330-7705392)
[»] chr2 (1 HSPs)
chr2 (229-265)||(35991377-35991413)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 18361567 - 18361129
Alignment:
Q  18 caaactccatgtcatcattccaagcccattctttttctgaaatgcataagacatctcagaaaatgtcataaattattttgcattaattaataggtcagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18361567 caaactccatgtcatcattccaagcccattctttttctgaaatgcataagacatctcagaaaatgtcataaattattttgcattaattaataggtcagac 18361468  T
Q  118 agaacacaaattcttcatcctttaagttaagaactacttttaccatcaaaggcttattgacattaaattacaatcactgtaa-gannnnnnnacacatac 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||       ||||||||    
T  18361467 agaacacaaattcttcatcgtttaagttaagaactacttttaccatcaaaggcttattgacattaaattacaatcagtgtaaagatatttttacacatac 18361368  T
Q  217 agtcattcatactcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatttgttcactgtctaaattctttaagtat 316  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18361367 agtcattcatagtcgtcagatcattaaaaacgtttaactttaatcataactactttgaaagtcacacatgatttgttcactgtctaaattctttaagtat 18361268  T
Q  317 atcaaagttaacctttgtgaaactaattcttttaccatgtatgattcgaggaatagaaacatgccaatggttttccttgattgaccgagttacttccttt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18361267 atcaaagttaacctttgtgaaactaattcttttaccatgtatgattcgaggaatagaaacatgccaatggttttccttgattgaccgagttactttcttt 18361168  T
Q  417 atgtacttatttggtaccaatttctctaagttgtctctg 455  Q
    | ||||||||||||||||||||||| |||||||||||||    
T  18361167 aagtacttatttggtaccaatttctttaagttgtctctg 18361129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 25094770 - 25094709
Alignment:
Q  223 tcatactcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 284  Q
    ||||| |||||  ||||||||| | |||||||||||||||||| || ||| |||||||||||    
T  25094770 tcataatcgtctaatcattaaacatgtttgactttaatcataagtacttttaaagtcacaca 25094709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 31650307 - 31650340
Alignment:
Q  235 gatcattaaaaacgtttgactttaatcataacta 268  Q
    |||||||||||| |||||||||||||||||||||    
T  31650307 gatcattaaaaatgtttgactttaatcataacta 31650340  T

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Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 3017743 - 3017302
Alignment:
Q  18 caaactccatgtcatcattccaagcccattctttttctgaaatgcataagacatctcagaaaatgtcataaa-ttattttgcattaattaataggtcaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3017743 caaactccatgtcatcattccaagcccattctttttctgatttgcagaagacatctcagaaaatgtcataaaattattttgcattaattaataggtcaga 3017644  T
Q  117 cagaacacaaattcttcatcctttaagttaagaactact-------tttaccatcaaaggcttattgacattaaattacaatcactgtaagannnnnnna 209  Q
     ||||||||||||| |  |   | ||||| | ||  | |       ||| ||||||||||||||||||||| |||||||||||| |||| ||            
T  3017643 tagaacacaaattcatagtg--taaagtttacaatcagtgtaaagttttcccatcaaaggcttattgacataaaattacaatcagtgta-gagttttttt 3017547  T
Q  210 cacatacagtcattcatactcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatttgttcactgtctaaattctt 309  Q
     ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |    
T  3017546 -acagacagtcattcatagtcgtcagatcattaaaaaagtttgactttaatcataactactttgaaagtcacacatgatttgatcattgtctaaattcgt 3017448  T
Q  310 taagtatatcaaagttaacctttgtgaaactaattcttttaccatgtatgattcgaggaatagaaacatgccaatggttttccttgattgaccgagttac 409  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||||| |||||||    
T  3017447 taagtaactcaaagttaacctttgtgaaactaattcttttaccatgtatgattggagggataggaacatgccaatgattttccttgattgactgagttac 3017348  T
Q  410 ttcctttatgtacttatttggtaccaatttctctaagttgtctctg 455  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||    
T  3017347 ttcctttaagtacttatttggtaccaatttctttaagttgtctctg 3017302  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 16168305 - 16168359
Alignment:
Q  230 cgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 284  Q
    ||||| |||||||||||| ||||||||||||||| |||||| | ||||| |||||    
T  16168305 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacaca 16168359  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 26762859 - 26762901
Alignment:
Q  223 tcatactcgtcagatcattaaaaacgtttgactttaatcataa 265  Q
    ||||| || |||||||| |||||||||||||||||||||||||    
T  26762859 tcataatcctcagatcagtaaaaacgtttgactttaatcataa 26762901  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 34338750 - 34338712
Alignment:
Q  255 tttaatcataactaatttgaaagtcacacatgatttgtt 293  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  34338750 tttaatcataactacttttaaagtcacacatgatttgtt 34338712  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 10744257 - 10744294
Alignment:
Q  230 cgtcagatcattaaaaacgtttgactttaatcataact 267  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  10744257 cgtcacatcattaaaaacgtttgactttaattataact 10744294  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 39560388 - 39560339
Alignment:
Q  236 atcattaaaaacgtttgactttaatcataactaatttgaaagtcacacat 285  Q
    ||||||||||| ||||||||||||||||||||| ||  ||||||| ||||    
T  39560388 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacat 39560339  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 26819280 - 26819340
Alignment:
Q  229 tcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatt 289  Q
    |||| ||||||||||||| |||||||||| |||  ||||| ||  ||||||||||||||||    
T  26819280 tcgttagatcattaaaaatgtttgacttttatcgcaactacttctaaagtcacacatgatt 26819340  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 5376306 - 5376363
Alignment:
Q  229 tcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatg 286  Q
    ||||||||||||||||||||||||||| |||||||||||| ||  |||||| ||||||    
T  5376306 tcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcgcacatg 5376363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 35169971 - 35170031
Alignment:
Q  229 tcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatt 289  Q
    |||| |||| |||||| | ||||||||||||||||||||| ||  ||||||||||||||||    
T  35169971 tcgttagattattaaagatgtttgactttaatcataactacttctaaagtcacacatgatt 35170031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 46214467 - 46214499
Alignment:
Q  231 gtcagatcattaaaaacgtttgactttaatcat 263  Q
    |||||||||| ||||||||||||||||||||||    
T  46214467 gtcagatcataaaaaacgtttgactttaatcat 46214499  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 18966056 - 18966008
Alignment:
Q  223 tcatactcgtcagatcattaaaaacgtttgactttaatcataactaatt 271  Q
    ||||| |||||| ||||||||||| |||||||||||||| |||||||||    
T  18966056 tcataatcgtcatatcattaaaaatgtttgactttaatcgtaactaatt 18966008  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 1132169 - 1132223
Alignment:
Q  230 cgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 284  Q
    ||||||||||||| |||| ||||||||| |||||||||||||  |||| ||||||    
T  1132169 cgtcagatcattagaaacatttgacttttatcataactaattctaaagacacaca 1132223  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 35341536 - 35341581
Alignment:
Q  233 cagatcattaaaaacgtttgactttaatcataactaatttgaaagt 278  Q
    ||||||||||||||| ||| |||||||||||||||| ||| |||||    
T  35341536 cagatcattaaaaacatttaactttaatcataactatttttaaagt 35341581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 37848469 - 37848421
Alignment:
Q  232 tcagatcattaaaaacgtttgactttaatcataactaatttgaaagtca 280  Q
    |||||||| ||||||| ||||||||||||| |||||| ||| |||||||    
T  37848469 tcagatcactaaaaacatttgactttaatcgtaactacttttaaagtca 37848421  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 14303943 - 14303995
Alignment:
Q  229 tcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcac 281  Q
    |||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||    
T  14303943 tcgtcagatcgttataaaagtttgactttaatcataactacttttaaagtcac 14303995  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 32102333 - 32102381
Alignment:
Q  236 atcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 284  Q
    ||||||||||| |||||||||||||||||| |||||| ||| |||||||    
T  32102333 atcattaaaaatgtttgactttaatcataaataattttaaaatcacaca 32102381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 15867666 - 15867621
Alignment:
Q  223 tcatactcgtcagatcattaaaaacgtttgactttaatcataacta 268  Q
    ||||| |||||| ||||||||||  |||||||||||||||||||||    
T  15867666 tcataatcgtcatatcattaaaactgtttgactttaatcataacta 15867621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 40705011 - 40704979
Alignment:
Q  236 atcattaaaaacgtttgactttaatcataacta 268  Q
    |||||||||||||||||| ||||||||||||||    
T  40705011 atcattaaaaacgtttgaatttaatcataacta 40704979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 38899988 - 38900055
Alignment:
Q  218 gtcattcatactcgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacat 285  Q
    |||| |||||||| | | |||||||||||||||||||||  ||| |||||| ||| ||||||||||||    
T  38899988 gtcaatcatactcattacatcattaaaaacgtttgacttgtatcctaactacttttaaagtcacacat 38900055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 44009323 - 44009269
Alignment:
Q  230 cgtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacaca 284  Q
    ||||| |||||||||||| ||||||||||||||| |||||| | ||||| |||||    
T  44009323 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacaca 44009269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 7705330 - 7705392
Alignment:
Q  231 gtcagatcattaaaaacgtttgactttaatcataactaatttgaaagtcacacatgatttgtt 293  Q
    ||||| |||||  |||| ||||||||| |||||||| | ||| ||||||||||||||||||||    
T  7705330 gtcaggtcattggaaacatttgacttttatcataaccacttttaaagtcacacatgatttgtt 7705392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 35991413 - 35991377
Alignment:
Q  229 tcgtcagatcattaaaaacgtttgactttaatcataa 265  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  35991413 tcgtcagatcattaaaaacgtttgactctaataataa 35991377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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