View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_low_12 (Length: 439)
Name: NF19897_low_12
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_12 |
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| [»] scaffold0421 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 21058728 - 21058314
Alignment:
| Q |
17 |
tatacataaaccacatagcatattaccacactcacaaatggggcgatatatcaaaataaacactattccaaatctattgttttctttcaaaaagttgttt |
116 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21058728 |
tatacataaaccatatagcatattaccacacccacaaatggggcgatatatcaaaataaacattattccaaatctattgttttctttcaaaaagttgttt |
21058629 |
T |
|
| Q |
117 |
tttattagctaatcactcaaaaatagttctcaatgaatatactaaattactaataactaagatttgaatattatctatnnnnnnnncagttattatacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
21058628 |
tttattagctaatcactcaaaaatagttctcaatgaatatactaaattactaataactaagatttgaatattatctataaaaaaaacagttattttacaa |
21058529 |
T |
|
| Q |
217 |
catatttaccaactttacctatttttctcggaaacccatcctgctaagtttgcagctttgtgcagggcagttctccacatgtgtaccttggttagattgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21058528 |
catatttaccaactttacctatttttctcggaaacccatcctgctaagtttgcagctttgtgcagggcagttctccacatgtgtaccttggttagattgt |
21058429 |
T |
|
| Q |
317 |
ccctgaaacgatcctcgtgtttggcaaatgcatctccataggttcccctctggtgtcttacatgagatgcatcgatgtgatagaaaacaggtatgacaac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21058428 |
ccctgaaacgatcctcgtgtttggcaaatgcatctccataggttcccctctggtgtcttacatgagatgcatcgatgtgatagaaaacaggtatgacaac |
21058329 |
T |
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| Q |
417 |
aagttttttcttctc |
431 |
Q |
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| T |
21058328 |
aagttttttcttctc |
21058314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 203 - 431
Target Start/End: Original strand, 666 - 894
Alignment:
| Q |
203 |
cagttattatacaacatatttaccaactttacctatttttctcggaaacccatcctgctaagtttgcagctttgtgcagggcagttctccacatgtgtac |
302 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
666 |
cagttattttataacatatttaccaactttacctatttttctcggaaacccatcctgctaagtttgcagctttgtgcagggcagttctccacatgtgtac |
765 |
T |
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| Q |
303 |
cttggttagattgtccctgaaacgatcctcgtgtttggcaaatgcatctccataggttcccctctggtgtcttacatgagatgcatcgatgtgatagaaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
766 |
cttggttagattgtccctgaaacgatcctcgtgtttggcaaatgcatctccataggttcccctctggtgtcttacatgagatgcatcgatgtgatagaaa |
865 |
T |
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| Q |
403 |
acaggtatgacaacaagttttttcttctc |
431 |
Q |
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| T |
866 |
acaggtatgacaacaagttttttcttctc |
894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 501 - 639
Alignment:
| Q |
19 |
tacataaaccacatagcatattaccacactcacaaatggggcgatatatcaaaataaacactattccaaatctattgttttctttcaaaaagttgttttt |
118 |
Q |
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||||||||| | ||||| |||||| ||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
501 |
tacataaactatatagcctattacaacagtcacaaatggggcgagaaatcaaaataaacagtattccaaatctattgttttctttcaaaaagttgctttt |
600 |
T |
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| Q |
119 |
tattagctaatcactcaaaaatagttctcaatgaatata |
157 |
Q |
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| T |
601 |
tattagctaatcactcaaaaatagttctcaatgaatata |
639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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