View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_low_17 (Length: 391)
Name: NF19897_low_17
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_17 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 30663095 - 30663284
Alignment:
| Q |
18 |
aaagaaaattagggaatctaaagaatatgataagaaaaatttaaaaattaaccatggggaggtgaagagaatgtttgattgcaagagttg--nnnnnnnn |
115 |
Q |
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| T |
30663095 |
aaagaaaattagggaatctaaagaatatgataagaaaaatttaaaaattaaccatggggaggtgaagagaatgtttgattgcaagaattgtttttttttt |
30663194 |
T |
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| Q |
116 |
ggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttgtttgcaatgaagtttgttttagccgtcatattggttttggt |
205 |
Q |
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| T |
30663195 |
ttagtgagtagcggcgatgggtgcttatggattttgtttttagtggttgtttgctatggagtttgttttagctgtgatattggttttggt |
30663284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 30663309 - 30663362
Alignment:
| Q |
202 |
tggtaggt-ttagggaggtgatgagtgtttttcgtgtctttgtttattttgggt |
254 |
Q |
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| T |
30663309 |
tggtaggtcttagggaggtgatgagtgcttttcgtgtctttgtttattttgggt |
30663362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 30665767 - 30665858
Alignment:
| Q |
293 |
gtgatattagtaaatggatgggttgat---annnnnnnnatgctaaaagtttcgttgattttcagattgtggattttcaaatttcccctttg |
381 |
Q |
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| T |
30665767 |
gtgatattagtaaatggatgggttgattttattttttttatgctaaaagttttgttgattttcagattgtgaattttcaaatttcccttttg |
30665858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 43344742 - 43344672
Alignment:
| Q |
116 |
ggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttgtttgcaatgaagtttgttttag |
186 |
Q |
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| T |
43344742 |
ggagcgagtagcggcgatgggtgcttatagatttcgtttttggtggttgttcacgatggagtttgttttag |
43344672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 1819867 - 1819797
Alignment:
| Q |
116 |
ggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttgtttgcaatgaagtttgttttag |
186 |
Q |
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| T |
1819867 |
ggagtgagtagcggcgatgggtatttatggatttcgtttccaatggttgtttgcgttggagtttgttttag |
1819797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 1819916 - 1819882
Alignment:
| Q |
65 |
ttaaccatggggaggtgaagagaatgtttgattgc |
99 |
Q |
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| T |
1819916 |
ttaaccatggggaggtgaagaggatgtttgattgc |
1819882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 31611499 - 31611619
Alignment:
| Q |
65 |
ttaaccatggggaggtgaagagaatgtttgattgcaagagttgnnnnnnnnggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttg |
164 |
Q |
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| T |
31611499 |
ttaaccatggggaggtgaagaggatgtttgattgcgaggggtg-tttttttggagtgagtagcggcaatggatgcttatggatttcgtttccattggttg |
31611597 |
T |
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| Q |
165 |
tttgcaatgaagtttgttttag |
186 |
Q |
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| T |
31611598 |
ttcgtgatggagtttgttttag |
31611619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 34092963 - 34092997
Alignment:
| Q |
65 |
ttaaccatggggaggtgaagagaatgtttgattgc |
99 |
Q |
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| T |
34092963 |
ttaaccatggggaggtgaagaggatgtttgattgc |
34092997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 8987856 - 8987756
Alignment:
| Q |
65 |
ttaaccatggggaggtgaagagaatgtttgattgcaagagttgnnnnnnnnggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttg |
164 |
Q |
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| T |
8987856 |
ttaaccatggggagatgaagaggatgtttgattgcgcgaggtgtttcttt-ggagtgagtagcggcgatgagtggttatggatttcgtttcaagtggttg |
8987758 |
T |
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| Q |
165 |
tt |
166 |
Q |
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|| |
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| T |
8987757 |
tt |
8987756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 8297 - 8331
Alignment:
| Q |
65 |
ttaaccatggggaggtgaagagaatgtttgattgc |
99 |
Q |
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| T |
8297 |
ttaaccatggggaggtgaagaggatgtttgattgc |
8331 |
T |
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