View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19897_low_20 (Length: 376)
Name: NF19897_low_20
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_20 |
 | |
|
| [»] chr3 (26 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 26)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 10034545 - 10034902
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10034545 |
ggtcgtcgagcctcgaatcacttcatatcgaatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
10034644 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10034645 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaagccatctgta |
10034744 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10034745 |
acggaatggggtctccaatatttgacagcactttccaacttgagtattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
10034844 |
T |
|
| Q |
319 |
tctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
|||||||||||| ||| |||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
10034845 |
tctcccttgtgtatctatatatcagggatttcgatgaaatgaagtcctttgatggaaa |
10034902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 9841401 - 9841757
Alignment:
| Q |
20 |
gtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9841401 |
gtcgtcgagcctcgaatcacttataatcgaatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaatgttg |
9841500 |
T |
|
| Q |
120 |
aatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |||| ||| | || | |
|
|
| T |
9841501 |
aatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattgctatttctacccaaaaaacagcaccgccggtta |
9841600 |
T |
|
| Q |
220 |
cggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccat |
319 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
9841601 |
cggaatggggtcaccaatatttgacggcactttcctacttgcgaattgataagggtgatgatatatttaacaccttgatgaaggagtcgttgctacccat |
9841700 |
T |
|
| Q |
320 |
ctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
9841701 |
ctcccttgtgtctctaaatatcagggatctctctgaaatgaagtcctttgatggaaa |
9841757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 10431568 - 10431211
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
10431568 |
ggtcgtcgagcctcgaatcactttatatcagatcccattattcaattgaattatttgaagtcaagcttaagatggacatgctcaccgctcttgaaaagtt |
10431469 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
| || | |||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||| || || | || |
|
|
| T |
10431468 |
gcatatgaaatgtcaaaagctgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataactccgccggtt |
10431369 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
10431368 |
acggaatggggtctccaatatttgacagcactttccttattgacaattcaaaagggtgatgatatatttaacaccttgatgaaggagtcgttgctaccca |
10431269 |
T |
|
| Q |
319 |
tctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
10431268 |
tctcccttgtgtatctatatatcactgatctctctgaaatgaagtcctttgatggaaa |
10431211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 10520027 - 10520384
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10520027 |
ggtcgtcgagcctcgaatcacttgagatcatatcccctgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
10520126 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
|| |||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||| ||| | || |
|
|
| T |
10520127 |
gactctagattgtgtagagttgtcattttgtgaaggagtttgtctacctcccaaattgcaatcaattaagatttctacccaaaaaacagcaccgccggtt |
10520226 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10520227 |
acggaatggggtctccaatatttgacagcactttccgacttgggtattgtaaagggtgatgatatatttaacaccttgatgaaggagtcattgctaccca |
10520326 |
T |
|
| Q |
319 |
tctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
||||||||||| |||| ||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
10520327 |
tctcccttgtgactctaactatcagggatctctctgaaatgaagtcctttgatggaaa |
10520384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 10263243 - 10263600
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
10263243 |
ggtcgtcgagcctcgaatcacttactatcaaatcccatgattcaattgaattatttgaagtcaagcttaagatggaaatgctcaccgctcttgaaaggtt |
10263342 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||| | || |
|
|
| T |
10263343 |
gtttctaacatgtgcagagttgtcattttctgaaggagtttgtctacctcccaaattacaatcaattgagatttctacccaaaaaacaacaccgccggtt |
10263442 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10263443 |
acggaatggggtctccaatatttgacagcactttcctacttgactattcaaaagggtgatgatatatttaacaccttgatgaaggagtcattgctaccca |
10263542 |
T |
|
| Q |
319 |
tctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
|||||||| ||| ||| | || ||||||| |||||||||||||||||||||||| |
|
|
| T |
10263543 |
tctcccttttgtatctacgtgtctttgatctctctgaaatgaagtcctttgatggaaa |
10263600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 376
Target Start/End: Original strand, 10129474 - 10129821
Alignment:
| Q |
29 |
cctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaa |
128 |
Q |
| |
|
|||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10129474 |
cctcaaatcactttatatcatatcccatgattcaattgaattatttgaagtcaagcttaagattgacatgctcacagctcttgaaaggttgaatctaaaa |
10129573 |
T |
|
| Q |
129 |
tgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| ||| |||| || ||||||| |
|
|
| T |
10129574 |
tgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattgagatacagtccaaaagaacagcaccgcctgtgacagaatggg |
10129673 |
T |
|
| Q |
229 |
gtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgt |
328 |
Q |
| |
|
|||| ||| ||||||| || ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10129674 |
gtcttcaagatttgaccgctctttcaagattgagtattggaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgt |
10129773 |
T |
|
| Q |
329 |
gtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
|| ||| |||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
10129774 |
gtatctatatatcagggatttcgatgaaatgaagtcctttgatggaaa |
10129821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 10666009 - 10666323
Alignment:
| Q |
20 |
gtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttg |
119 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10666009 |
gtcgtcgagactcgaagaacttgtgatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcactgctcttgaaaagttg |
10666108 |
T |
|
| Q |
120 |
aatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaa |
219 |
Q |
| |
|
| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| || || | || | |
|
|
| T |
10666109 |
attctaagatgtgcacagttgtcattttgtgaaggagtttgtctacctcccaaattacaaacaattgtgatttcatctcaaagaataactccgccggtta |
10666208 |
T |
|
| Q |
220 |
cggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
10666209 |
cggaatggggtctccaatatttgacagcactttcctacttgagtattgaaaagggtgatgatatatttaacaccttgatgaaggagtcgttgctacccat |
10666308 |
T |
|
| Q |
320 |
ctcccttgtgtctct |
334 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10666309 |
atcccttgtgtctct |
10666323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 10361328 - 10360971
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||| |
|
|
| T |
10361328 |
ggtcgtcgagcctcgaatcacttataatcatatcccatgattcaattgaattatttgaagtcaagcttaagatggacacgcttgccgctcttgaacggtt |
10361229 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
|| |||| | || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| || |||| |
|
|
| T |
10361228 |
gactctagattggccagagttgtcgttttgtgaaggagtttgtctacctcccaaattacaatcaattatgatacagtccaaaagaacagcactgcctgtg |
10361129 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10361128 |
acagaatggggtctccaatatttgacagcactttccaacttgggtattggaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccg |
10361029 |
T |
|
| Q |
319 |
tctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
10361028 |
tctcccttgtgtctctggaaatccatcatctctctgaaatgaagtcctttgatggaaa |
10360971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 10373369 - 10373012
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10373369 |
ggtcgtcgagcctcgaatcacttcagatcttctcccatgcttcaattgaattatttgaagtcaagcttaagatggacatgctcaccgctcttgaaaggtt |
10373270 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
|| | | |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||| || ||| | || |
|
|
| T |
10373269 |
gagtttgggatgtcgagagttgtcattttgtgaaggagtttgtctacctctcaaattacaatcaatttggatttcatctcgaagaataacaccgccggtt |
10373170 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
|||||||||||||||||| || | ||||| || || |||| ||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10373169 |
acggaatggggtctccaagatctaacagctctgtcaagcttgagtattagaaaggatgatgatatagttaacaccttgatgaaggagtcgttgctaccca |
10373070 |
T |
|
| Q |
319 |
tctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
10373069 |
tctcccttgtgcatctacgtatcaattatctctctgaaatgaagtcctttgatggaaa |
10373012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 9852281 - 9852638
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
||||||| |||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
9852281 |
ggtcgtcaagcctccaatcacttcggatcaaatcccataattcaattgaattatttgaagtcaagcttaagatggacatgctcaccgctcttgaagattt |
9852380 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
| || | ||||| | |||||||||||| |||||||||||||||||||||||||||| | ||||| |||||| || ||| |||| ||| | || |
|
|
| T |
9852381 |
gcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctcccaaattaagaacaattgtgatttctaccaaaaaaacagcaccgccggtt |
9852480 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9852481 |
acggaatggggtctccaatatttgacagctctttcatcattgtggattgtaaagggtgatgatatatttaacaccttgatgaaggagtcattgctaccca |
9852580 |
T |
|
| Q |
319 |
tctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
|||||||||||||||| |||||| | |||| |||||||||||||||||||||||| |
|
|
| T |
9852581 |
tctcccttgtgtctctaaatatcatggttctctctgaaatgaagtcctttgatggaaa |
9852638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 81 - 376
Target Start/End: Original strand, 9980070 - 9980365
Alignment:
| Q |
81 |
aagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaat |
180 |
Q |
| |
|
|||||||||||||| |||||| | || ||||||| ||| || | ||||| | |||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
9980070 |
aagcttaagatggaaatgctctccgcccttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctctcaaattacaat |
9980169 |
T |
|
| Q |
181 |
caattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatga |
280 |
Q |
| |
|
||||| |||||| || ||| |||| ||| | || |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||| |
|
|
| T |
9980170 |
caattgtgatttctaccaaaaaaacagcaccgccggttacggaatggggtctccaatatttgacagcacttttcgacttgagaattgtaaagggtgatga |
9980269 |
T |
|
| Q |
281 |
tatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
9980270 |
tatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgcatctacgtatctgtgatctctctgaaatgaagtcctttgatggaaa |
9980365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 24 - 376
Target Start/End: Original strand, 10503129 - 10503481
Alignment:
| Q |
24 |
tcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatc |
123 |
Q |
| |
|
||||||||| |||||||| | ||| ||||||||||||| |||||| |||||||||||||||| ||||| ||| |||||| ||||||||| |||| | |
|
|
| T |
10503129 |
tcgagcctccaatcacttcatatccaatcccatgattcagttgaatcatttgaagtcaagcttcagatgaacacgctcacggctcttgaagagttggact |
10503228 |
T |
|
| Q |
124 |
taaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacgga |
223 |
Q |
| |
|
| | ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| | | || ||| | | |
|
|
| T |
10503229 |
tggattgtcaggagttatcattttgtgaaggagtttgtcttcctcccaaattacaatcaattgatatttggtcccaaagaacaacaactcctataatgaa |
10503328 |
T |
|
| Q |
224 |
atggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcc |
323 |
Q |
| |
|
||||||||| || || |||| || ||||| | ||| ||||| | |||||||||||| |||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
10503329 |
atggggtcttgaagatctgaccgctctttcaagactgaaaattggagcaggtgatgatatatttaacaccttgatgaaggagtcgttgcttcccatctcc |
10503428 |
T |
|
| Q |
324 |
cttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
|||| ||||| |||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
10503429 |
cttgcatctctatatatcagtgatctctatgaaatgaagtcctttgatggaaa |
10503481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 61 - 376
Target Start/End: Original strand, 10583097 - 10583412
Alignment:
| Q |
61 |
caattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttg |
160 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| || | ||||| | |||||||||||| |||||||||||| |
|
|
| T |
10583097 |
caattgaattatttgaagtcaagtttaagatggaaatgctcaccgctcttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttg |
10583196 |
T |
|
| Q |
161 |
tctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattg |
260 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||| |||||| |||| ||| | || ||||||||||||||| || || | ||||| ||||| | | |
|
|
| T |
10583197 |
tctacctctcaaattacgatcaattgtgatttttacccaaaaaacagcaccgccggttacggaatggggtctcaaagatctaacagctctttcaagctgg |
10583296 |
T |
|
| Q |
261 |
acaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatga |
360 |
Q |
| |
|
| |||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||| |||||||| |
|
|
| T |
10583297 |
agtattggaaaggatgatgatatatttaacaccttgatgaaggagtcgttgctacccatctcccttgtgtatctatatatctggaatctctctgaaatga |
10583396 |
T |
|
| Q |
361 |
agtcctttgatggaaa |
376 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10583397 |
agtcctttgatggaaa |
10583412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 10091336 - 10091658
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| || |||||| || ||||| | ||| |
|
|
| T |
10091336 |
ggtcctcgagcctccaatatcttgagatcagatcccatgattcaattgaattgtttaaagtcaagcttcagatgaactcgctcaccgcccttgagaagtt |
10091435 |
T |
|
| Q |
119 |
gaatctaaaatgt---gcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatct |
215 |
Q |
| |
|
| ||| |||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||| || || ||| | |
|
|
| T |
10091436 |
gtttctgaaatgtcgaggagtgttgtcattttgtgaaggagtttgtctacctcccaaattacaaaagattgttattttttccaaaaaaataacaccgccg |
10091535 |
T |
|
| Q |
216 |
gtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctac |
315 |
Q |
| |
|
|| |||||||||||||||||| || | || | |||||| ||||| ||| || ||| | |||||||||||||| |||| ||| |||||| ||||||| |
|
|
| T |
10091536 |
gttacggaatggggtctccaagatctaaccactctttccgaattgatgattaaagaggcaggtgatatagttaacaacttggtgacggagtcgttgctac |
10091635 |
T |
|
| Q |
316 |
ccatctcccttgtgtctctggat |
338 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10091636 |
ccatctcccttgtgtctctggat |
10091658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 10198218 - 10198540
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| || |||||| || ||||| | ||| |
|
|
| T |
10198218 |
ggtcctcgagcctccaatatcttgagatcagatcccatgattcaattgaattgtttaaagtcaagcttcagatgaacgcgctcaccgcccttgagaagtt |
10198317 |
T |
|
| Q |
119 |
gaatctaaaatgt---gcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatct |
215 |
Q |
| |
|
| ||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||| || || ||| | |
|
|
| T |
10198318 |
gtttctgaaatgtcgaggactgttgtcattttgtgaaggagtttgtctacctcccaaattacaaaagattgttattttttccaaaaaaataacaccgccg |
10198417 |
T |
|
| Q |
216 |
gtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctac |
315 |
Q |
| |
|
|| |||||||||||||||||| || | || | |||||| ||||| ||| || ||| | |||||||||||||| |||| ||| |||||| ||||||| |
|
|
| T |
10198418 |
gttacggaatggggtctccaagatctaaccactctttccgaattgatgattaaagaggcaggtgatatagttaacaacttggtgacggagtcgttgctac |
10198517 |
T |
|
| Q |
316 |
ccatctcccttgtgtctctggat |
338 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10198518 |
ccatctcccttgtgtctctggat |
10198540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 11771776 - 11772133
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |||| || ||| || |||||||| | ||| |
|
|
| T |
11771776 |
ggtcctcgagcctccaatatcttgagatcagatcccatgattcaattgaattgtttaaagtcaagcttcggatgaactcgcttaccgctcttgagaagtt |
11771875 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
| ||| || | || ||| |||||||||||||||||||||||||||||||| |||||||||||| || || ||||||| ||||| |||| | || |
|
|
| T |
11771876 |
gtttctgaatcaaggagtgttttcattttgtgaaggagtttgtctacctcccaacttacaatcaattgtgagtttttcccaaataacaacaccaccagtt |
11771975 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
|| ||||||||||||||| | || | ||||| |||| |||| ||| | |||| ||||||| | |||||||||||| |||| ||||| || | |
|
|
| T |
11771976 |
acagaatggggtctccaaaaccaaaccactctttcgaaattggttattggaaatgatgataatatagtcaccaccttgatgaaagagttgttgctgccta |
11772075 |
T |
|
| Q |
319 |
tctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
||||||||||| ||| ||||| ||||||| ||||||||||||| ||||||||||| |
|
|
| T |
11772076 |
tctcccttgtggacctgtctatcattgatctctatgaaatgaagtcttttgatggaaa |
11772133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 10531219 - 10531420
Alignment:
| Q |
35 |
atcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgca |
134 |
Q |
| |
|
||||||| | |||| ||||||||||||||||| ||| || ||||||||||| |||||||| |||||| ||||||||| |||| |||| | ||| | |
|
|
| T |
10531219 |
atcacttaaaatcaaatcccatgattcaattggattgcttaaagtcaagcttcggatggacacgctcactgctcttgaacaattgactctagattgtccc |
10531318 |
T |
|
| Q |
135 |
gagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctcc |
234 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| || | ||||||| ||| || ||||||| ||||||||||||| |
|
|
| T |
10531319 |
gagttgttattttgtgaaggaatttgtctacctcccaaattacaatcaattgtgatatctttccaaagagcaacgccgcctgtaacagaatggggtctcc |
10531418 |
T |
|
| Q |
235 |
aa |
236 |
Q |
| |
|
|| |
|
|
| T |
10531419 |
aa |
10531420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 376
Target Start/End: Complemental strand, 11779489 - 11779152
Alignment:
| Q |
39 |
cttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagt |
138 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||| ||||||||||| |||| || |||||| |||||||| | |||| ||| || | || || |
|
|
| T |
11779489 |
cttgaaatcagatcccatgatttaattgaattgtttaaagtcaagcttcggatgaactcgctcactgctcttgagaagttgtttctgaatcaaggagtgt |
11779390 |
T |
|
| Q |
139 |
tgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaata |
238 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||| || || ||||||| ||||| |||| | || || ||||||||||||||| | |
|
|
| T |
11779389 |
tttcattttgtgaaagagtttgtctacctcccaaattacaatcaattgtgagtttttcccaaataacaacaccaccagttacagaatggggtctccaaaa |
11779290 |
T |
|
| Q |
239 |
tttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggat |
338 |
Q |
| |
|
|| | ||||| | || |||| ||| | |||| ||||||| | ||||||||||||||| | |||||||| |||||||||||| ||| | |
|
|
| T |
11779289 |
ccaaaccactctttcagaactggttattggaaatgatgataatatagtcaccaccttgatgaaggatttgttgctacctatctcccttgtggacctgtct |
11779190 |
T |
|
| Q |
339 |
atcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
11779189 |
atcattgatctctatgaaatgaagtccttcgatggaaa |
11779152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 10680010 - 10680167
Alignment:
| Q |
27 |
agcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaa |
126 |
Q |
| |
|
|||||| |||||||| | |||| ||| ||||||||||||| | | || ||||||||||| |||||||| |||||| ||||||||| | || |||| |
|
|
| T |
10680010 |
agcctccaatcacttaaaatcaaatcacatgattcaattggactgcttaaagtcaagcttcggatggacacgctcactgctcttgaacaatagactctag |
10680109 |
T |
|
| Q |
127 |
aatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatt |
185 |
Q |
| |
|
| ||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10680110 |
attgtccagagttgttattt-gtgaaggagtttgtctacctcccaaattacaatcaatt |
10680167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 10192882 - 10192995
Alignment:
| Q |
263 |
aattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaag |
362 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| | || ||| | ||||||||||||||||||||||||||| |||| ||||||| || | |||||| |
|
|
| T |
10192882 |
aattgaaaaggatggtgatatagttaacaccttggtaaaagagccgttgctacccatctcccttgtgtctctgaatattggtgatctctataacatgaag |
10192981 |
T |
|
| Q |
363 |
tcctttgatggaaa |
376 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10192982 |
tcctttgatggaaa |
10192995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 13852962 - 13852822
Alignment:
| Q |
45 |
atcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcat |
144 |
Q |
| |
|
|||| ||||||||| ||||||| || | || |||| |||||| |||||||| ||| || ||||||||| ||||| | | ||||| ||||||||||| |
|
|
| T |
13852962 |
atcaaatcccatgactcaattggatcacttaaagtgaagcttcggatggacacgcttaccgctcttgaacggttggacttggaatgtcgagagttgtcat |
13852863 |
T |
|
| Q |
145 |
tttgtgaaggagtttgtctacctcccaaattacaatcaatt |
185 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13852862 |
tttgtgaaggagtttgtctacctcctaaattacaatcaatt |
13852822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 10085962 - 10086075
Alignment:
| Q |
263 |
aattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaag |
362 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| | || ||| | |||||| |||||||||||||||||||| |||| ||||||| || | |||||| |
|
|
| T |
10085962 |
aattgaaaaggatggtgatatagttaacaccttggtaaaagagccgttgctaaccatctcccttgtgtctctgaatattggtgatctctataacatgaag |
10086061 |
T |
|
| Q |
363 |
tcctttgatggaaa |
376 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10086062 |
tcctttgatggaaa |
10086075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 10531561 - 10531638
Alignment:
| Q |
257 |
attgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctct |
334 |
Q |
| |
|
||||||| ||| || || ||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
10531561 |
attgacagttggaacggttgatgatatagttaacaccgtgctgaacgagtcattgcttcccatctcccttgtgtctct |
10531638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 10680359 - 10680436
Alignment:
| Q |
257 |
attgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctct |
334 |
Q |
| |
|
||||||| ||| || || ||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
10680359 |
attgacagttggaacggttgatgatatagttaacaccgtgctgaacgagtcattgcttcccatctcccttgtgtctct |
10680436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 10085907 - 10085944
Alignment:
| Q |
129 |
tgtgcagagttgtcattttgtgaaggagtttgtctacc |
166 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
10085907 |
tgtggagagttgtcattttgtgaaggagtttgcctacc |
10085944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 10192827 - 10192864
Alignment:
| Q |
129 |
tgtgcagagttgtcattttgtgaaggagtttgtctacc |
166 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
10192827 |
tgtggagagttgtcattttgtgaaggagtttgcctacc |
10192864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 55129 - 54772
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||| |||||| | || ||||||| || |
|
|
| T |
55129 |
ggtcgtcgagcctcgaatcacttataatcgaatcctgttattcaattgaattatttgaagtcaagcttaagatggaaatgctctccgcccttgaaaattt |
55030 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
| || | ||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| || ||| |||| ||| | || |
|
|
| T |
55029 |
gcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctctcaaattacaatcaattgtgatttctaccaaaaaaacagcaccgccggtt |
54930 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54929 |
acggaatggggtctccaatatttgacagctcttttttttttgtgtattgtaaagggtgatgatatatttaacaccttgatgaaggagtcattgctaccca |
54830 |
T |
|
| Q |
319 |
tctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
||||||||||| ||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
54829 |
tctcccttgtgcatctacgtatctgtgatctctctgaaatgaagtcctttgatggaaa |
54772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 376
Target Start/End: Original strand, 26909433 - 26909787
Alignment:
| Q |
22 |
cgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggttgaa |
121 |
Q |
| |
|
|||| ||||| ||||||||| | |||| ||||||||||||||||||||||||| |||| |||||| |||||||| |||||||| ||||||| |||| | |
|
|
| T |
26909433 |
cgtcaagccttgaatcacttaaaatcaaatcccatgattcaattgaattatttaaagtgaagcttcggatggacacgctcacagatcttgaacagttgta |
26909532 |
T |
|
| Q |
122 |
tctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacg |
221 |
Q |
| |
|
||| | ||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| || |||| ||||| ||| ||||| ||| |
|
|
| T |
26909533 |
tctggactgtcgagagttgtcattttgtgaaggtgtttgtctacctcccaacttacaatcaattgacctttggtctcaaataacaacaccgtctgttacg |
26909632 |
T |
|
| Q |
222 |
gaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatct |
321 |
Q |
| |
|
|||||| |||||||| || | || | ||||| |||||| || || ||||| |||||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26909633 |
gaatggtgtctccaagatctaaccactctttcagaattgactatcaaagagggtcatgatacatttaacaccttgatgaaggagttgttgctacccatct |
26909732 |
T |
|
| Q |
322 |
cccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
||||||| ||||| | |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
26909733 |
cccttgtttctctacaaatcatggatctctatgaaatgaagtcctttgatggaaa |
26909787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 11487571 - 11487887
Alignment:
| Q |
19 |
ggtcgtcgagcctcgaatcacttgagatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcacagctcttgaaaggtt |
118 |
Q |
| |
|
||||||| |||||| ||| ||||| |||| ||||||||| ||||||| || | || ||||||| ||| ||||||||||||||| ||||||||| || |
|
|
| T |
11487571 |
ggtcgtcaagcctccgatctcttgaaatcaaatcccatgactcaattggatcacttcaagtcaaacttcggatggacatgctcactgctcttgaagtttt |
11487670 |
T |
|
| Q |
119 |
gaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgta |
218 |
Q |
| |
|
| ||| || ||| ||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||| || ||||| ||| || |||| |
|
|
| T |
11487671 |
gtctctgaattgtccagagttgtcattttgtgaagatgtttctctacctcccaaattagaatcaattgagattttgtcggaaagatcaacgccgcctgtt |
11487770 |
T |
|
| Q |
219 |
acggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctaccca |
318 |
Q |
| |
|
||||||||||||||| || || |||| || ||||| ||||| |||| | ||||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
11487771 |
acggaatggggtctcaaagatctgaccgctctttcacggttgactattggagtgggtgatgatatacttaacaccttgatgaagcagtcgttgctaccca |
11487870 |
T |
|
| Q |
319 |
tctcccttgtgtctctg |
335 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11487871 |
tctcccttgtgtctctg |
11487887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 44954896 - 44954838
Alignment:
| Q |
310 |
tgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtccttt |
368 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||| |
|
|
| T |
44954896 |
tgctacccatctcccttgtgtctctgactatcagttatctggatgaaatgaagtccttt |
44954838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 44955066 - 44955024
Alignment:
| Q |
139 |
tgtcattttgtgaaggagtttgtctacctcccaaattacaatc |
181 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
44955066 |
tgtcattttgtgaaggtgtttgcctacctcccaaattacaatc |
44955024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 376
Target Start/End: Complemental strand, 17850338 - 17850093
Alignment:
| Q |
134 |
agagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaa---ccatctgtaacggaatggggt |
230 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||| |||| |||||||| | || ||||||| ||||||||| |
|
|
| T |
17850338 |
agagttgtcattttgtggaggagtttccctacctcccaagttacaatcaattgatattcattcccgaagaacaacagccccgcctgtaacagaatggggt |
17850239 |
T |
|
| Q |
231 |
ctccaatatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgt |
330 |
Q |
| |
|
|||||| | || || ||||| | ||||| ||| ||||| |||||||||||| |||||||||||||||||||| ||||| || || ||||| |||| |
|
|
| T |
17850238 |
ctccaaggcctaactgctctttcatcattgagtcttggaaaggatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgt |
17850139 |
T |
|
| Q |
331 |
ctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaa |
376 |
Q |
| |
|
||||| |||| | ||||| || | |||| |||||||||||||| |
|
|
| T |
17850138 |
ctctgactatctgtcatctctataatctgaactcctttgatggaaa |
17850093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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