View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19897_low_21 (Length: 376)
Name: NF19897_low_21
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 55956477 - 55956828
Alignment:
| Q |
7 |
tcgaagaatatgatgtggaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcg |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55956477 |
tcgaagagtatgatgtggaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcg |
55956576 |
T |
|
| Q |
107 |
ttcttcactttgattttctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55956577 |
ttcttcactttgattttctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcat |
55956676 |
T |
|
| Q |
207 |
acattgaaattggcacttatgaccttgagactgatctatgtctatgtcttctctcgccaggatattactatatttagtatattgaagacaaagacaacga |
306 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55956677 |
acagtgaaattggcacttatgaccttgagactgatctatgtccaagtcttctctcgccaggatattactatatttagtatattgaagacaaagacaacga |
55956776 |
T |
|
| Q |
307 |
caaaaagtgatagtgaattgttgcatgttgtattaaacaagtatcaaattac |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55956777 |
caaaaagtgatagtgaattgttgcatgttgtattaaacaagtatcaaattac |
55956828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 55960004 - 55960056
Alignment:
| Q |
155 |
aagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcata |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
55960004 |
aagaagatgaatgaggaaatgatgagtaaggaagatttcaattccatggcata |
55960056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 12426815 - 12426995
Alignment:
| Q |
15 |
tatgatgtggaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcac |
114 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || ||| |
|
|
| T |
12426815 |
tatggtgtggaagttttcctgctaatgctagttgatgcaagtttcctattagaggaagcttccatggtcctggtggaagtttatg------gctcctcat |
12426908 |
T |
|
| Q |
115 |
tttgattttctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccat |
201 |
Q |
| |
|
||||||||||||||| || || |||| || |||| | |||||||||||||||||||| || | ||||||| ||||| ||||||| |
|
|
| T |
12426909 |
tttgattttctgcttgtagatttttgctaggaaaagcagaaagaagatgaatgaggaaattatcaagaaggaagatttggattccat |
12426995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 12265974 - 12265825
Alignment:
| Q |
46 |
ttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgattttctgcttataaatctttgttaaa |
145 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| || ||||||| || |
|
|
| T |
12265974 |
ttgatgcaagtttcctattagaggaagcttccatggtcctggtggaagtttatg------gctcctcactttgattttatgcttgtagatctttgctagg |
12265881 |
T |
|
| Q |
146 |
caaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccat |
201 |
Q |
| |
|
||| || |||||||||||| |||||||| | || ||||| | |||||| |||||| |
|
|
| T |
12265880 |
aaaattagcaagaagatgaaggaggaaattaggaagaagggagatttgagttccat |
12265825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University