View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_low_22 (Length: 370)
Name: NF19897_low_22
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 5313326 - 5313679
Alignment:
| Q |
17 |
aatataaagcaatgttcagtcaatgctgtggtaatccaagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttcg |
116 |
Q |
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| T |
5313326 |
aatataaagcaatgttcagtcaatgctgtggtaatccaagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttag |
5313425 |
T |
|
| Q |
117 |
agataaaatggggacagaaaatagcagtttgcggacctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5313426 |
agataaaatggggacagaaaatagcagtttgcggacctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcagg |
5313525 |
T |
|
| Q |
217 |
aactgtaagttacaaactcgaaaggttgtgtttcttccaattccaaattcatcatattcatgaagatggtatcttatatttttcctcccatgatatt--- |
313 |
Q |
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||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5313526 |
aactgtaagttacaaactcaacaggttgtgttttttccaattccaaattcatcatattcatgaagatggtgtcttatatttttcctcccatgatatttca |
5313625 |
T |
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| Q |
314 |
-tcactataatggaaatcaggttaatgtagttagcgcactagcctatgcttctc |
366 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
5313626 |
ctcactataatggaaatcaggttaatgtaggtagcgcactagcctatgtttctc |
5313679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 15125401 - 15125577
Alignment:
| Q |
53 |
caagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttcgagataaaatggggacagaaaatagcagtttgcggac |
152 |
Q |
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| T |
15125401 |
caagatggaaacttcatttgggatcatgaatctatgtctccagccttaaaagatgttaatttagagataaaatggagacagaaaattgcagtttgtggac |
15125500 |
T |
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| Q |
153 |
ctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcaggaactgtaagttac |
229 |
Q |
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| T |
15125501 |
cagttggatctggaaaatcatctcttttgtatgcaatacttggagagatccctaagatttcaggaactgtaagttac |
15125577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 5306134 - 5306325
Alignment:
| Q |
38 |
aatgctgtggtaatccaagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttcgagataaaatggggacagaaaa |
137 |
Q |
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|||||| ||| ||| |||| |||||||||||||||||||||| ||||| | || | |||||||| |||||| || | || || |||||||||||||||| |
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| T |
5306134 |
aatgctatggaaattcaagatggcaacttcatttgggatcataaatctttgtctccaactttaacagatgtaaatatagaaatcaaatggggacagaaaa |
5306233 |
T |
|
| Q |
138 |
tagcagtttgcggacctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcaggaactgtaagttac |
229 |
Q |
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|||||||||| ||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
5306234 |
tagcagtttgtggaccagttggagccggaaaatcatcacttttgtatgcaatacttggagagattcctaagatttaaggagctgtaagttac |
5306325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 5283481 - 5283275
Alignment:
| Q |
23 |
aagcaatgttcagtcaatgctgtggtaatccaagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttcgagataa |
122 |
Q |
| |
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||||||| |||||| |||||| ||| ||| |||| ||| ||||||||||||||||||||||| || || | |||||||| |||||| || | || || | |
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| T |
5283481 |
aagcaattttcagttaatgctatggaaattcaagatggaaacttcatttgggatcatgaatcagtgtctccaactttaagagatgttaatatagaaatca |
5283382 |
T |
|
| Q |
123 |
aatggggacagaaaatagcagtttgcggacctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcaggaactgt |
222 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||| |
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| T |
5283381 |
ggcggggacagaaaattgcagtttgtggaccagttggagctggaaaatcatctcttttgtattcaatactaggagagattccaaagatttcaggaactgt |
5283282 |
T |
|
| Q |
223 |
aagttac |
229 |
Q |
| |
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||||||| |
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| T |
5283281 |
aagttac |
5283275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 11832652 - 11832858
Alignment:
| Q |
21 |
taaagcaatgttcagtcaatgctgtggtaatccaagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttcgagat |
120 |
Q |
| |
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|||||||||||||||| ||| || ||| ||| |||| ||| |||||||||| |||||| ||||||| || | |||||||| |||||| || | || || |
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| T |
11832652 |
taaagcaatgttcagttaattctatggaaattcaagatggagacttcatttgtgatcataaatctgtgtctccaactttaagagatgttaatatagaaat |
11832751 |
T |
|
| Q |
121 |
aaaatggggacagaaaatagcagtttgcggacctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcaggaact |
220 |
Q |
| |
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| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
11832752 |
caggtggggacagaaaattgcagtttgtggaccagttggagctggaaaatcatctcttttgtatgcaatactaggagagattccaaagatttcaggaact |
11832851 |
T |
|
| Q |
221 |
gtaagtt |
227 |
Q |
| |
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||||||| |
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| T |
11832852 |
gtaagtt |
11832858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 5290964 - 5290771
Alignment:
| Q |
35 |
gtcaatgctgtggtaatccaagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttcgagataaaatggggacaga |
134 |
Q |
| |
|
||||||||||||| || |||| ||| ||||||| |||||||||||||||| | || | ||| ||||| ||||| || || || || |||||| |||||| |
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| T |
5290964 |
gtcaatgctgtggagattcaagatggaaacttcaattgggatcatgaatctatgtctccaaccttaaaggatgtaaatttagaaatcaaatggagacaga |
5290865 |
T |
|
| Q |
135 |
aaatagcagtttgcggacctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcaggaactgtaagtta |
228 |
Q |
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|
||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
5290864 |
aaatagcagtttgtggaccagttggagctggaaaatcatcacttttgtatgcaatacttggagagattcccaagattcaaggaactgtaagtta |
5290771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 226
Target Start/End: Complemental strand, 14950265 - 14950092
Alignment:
| Q |
53 |
caagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttcgagataaaatggggacagaaaatagcagtttgcggac |
152 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||| | |||||||| | ||||||| || || || |||||| |||| ||||| |||||||||||| |
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| T |
14950265 |
caagatggtaacttcatttgggatcatgaatctgtatctccaactttaacaaatgtgaatttagatatcaaatggagacacaaaattgcagtttgcggag |
14950166 |
T |
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| Q |
153 |
ctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcaggaactgtaagt |
226 |
Q |
| |
|
| || ||| | ||||||||||||||| ||||||||||||| ||||||||| | |||||| ||||||||||||| |
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| T |
14950165 |
cagtgggatccggaaaatcatctcttttgtatgcaatactcggagagatttccaagattcaaggaactgtaagt |
14950092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 5306409 - 5306471
Alignment:
| Q |
304 |
ccatgatatttcactataatggaaatcaggttaatgtagttagcgcactagcctatgcttctc |
366 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||||||| | || |||| ||||||| ||||| |
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| T |
5306409 |
ccatgatattttactataatggaaaacaggttaatgtaggtggcacacttgcctatgtttctc |
5306471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 14949739 - 14949681
Alignment:
| Q |
302 |
tcccatgatatttcactataatggaaatcaggttaatgtagttagcgcactagcctatg |
360 |
Q |
| |
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|||||| |||||| |||||||||||| ||||||||||||| | || |||||||||||| |
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|
| T |
14949739 |
tcccataatattttgctataatggaaaacaggttaatgtaggtggcacactagcctatg |
14949681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 31526954 - 31526769
Alignment:
| Q |
44 |
gtggtaatccaagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttcgagataaaatggggacagaaaatagcag |
143 |
Q |
| |
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|||| ||| |||||||||||||||| |||||||| ||||||||| |||| |||||||| |||||| || || || |||||| |||||||||||||||||| |
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| T |
31526954 |
gtggaaattcaagctggcaacttcacttgggatcttgaatctgtgtccccaactttaacagatgttaatttagaaataaaacggggacagaaaatagcag |
31526855 |
T |
|
| Q |
144 |
tttgcggacctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcaggaactgtaagttac |
229 |
Q |
| |
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|||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||| |||||||||||||||| |
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| T |
31526854 |
tttgtggaccggttggagctggaaaatcgtctcttctgtatgcaatactcggagagattccaaatattcaaggaactgtaagttac |
31526769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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