View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_low_24 (Length: 364)
Name: NF19897_low_24
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 44605453 - 44605767
Alignment:
| Q |
13 |
aatattgatgatggttcttctgatgtcatggactaacattacatgatacacgattataccttctcagagataaagcgtacacctttatctggataatctg |
112 |
Q |
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| T |
44605453 |
aatattgatgatggttcttctgatttcatggactaacattacatgatacacgattataccttctcagagataaagcgtacacctttatctggataatctg |
44605552 |
T |
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| Q |
113 |
cctcatatgtttcacccaataatggattaaatggtttgcaagttctaccactagtgtttgcataccctgaaactgcaaatgcagccacatataatatcct |
212 |
Q |
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| T |
44605553 |
cctcatatgtttcacccaataatggattaaatggtttgcaagttctaccactagtgtttgcataccctgaaactgcaaatgcagccacatataatatcct |
44605652 |
T |
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| Q |
213 |
cattagacggtcaccctgtgcacatatatatgtgatttatttaattagtacaaacaatgaaacttcctaattaatatataatataatttacataaattag |
312 |
Q |
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| T |
44605653 |
cattagacggtcaccctgtgcacatatatatgtgatttat----ttagtacaaacaatgaaacttcc----taatatataatataatttacaaaaattag |
44605744 |
T |
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| Q |
313 |
tgagctatattttaactattgca |
335 |
Q |
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| T |
44605745 |
tgagctatattttaactattgca |
44605767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 32886262 - 32886169
Alignment:
| Q |
65 |
attataccttctcagagataaagcgtacacctttatctggataatctgcctcatatgtttcacccaataatggattaaatggtttgcaagttct |
158 |
Q |
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| T |
32886262 |
attataccttctctgagaaaaagcgaaggcctttatctggatagttagcctcgtatgtttctccaagtaatggattaaatggtttgcaaattct |
32886169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 24481883 - 24481789
Alignment:
| Q |
64 |
gattataccttctcagagataaagcgtacacctttatctggataatctgcctcatatgtttcacccaataatggattaaatggtttgcaagttct |
158 |
Q |
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||||| |||||||| ||||| || || | ||||||||||||| | || ||||||||||| || || | |||||||||||| ||||| ||| |||| |
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| T |
24481883 |
gattagaccttctctgagatgaaacgaaaacctttatctggaaattccgcctcatatgtctcccctagtaatggattaaacggtttacaatttct |
24481789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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