View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_low_28 (Length: 309)
Name: NF19897_low_28
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 14488329 - 14488034
Alignment:
| Q |
14 |
caaagggtataaaaaatcatagaaacaaagatgaagaacaaaggttttctagatttccatacctgagnnnnnnntcattgcaggcgatgttagacgatca |
113 |
Q |
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| T |
14488329 |
caaagggtataaaaaatcatagaaacaaagatgaagaacaaaggttttctagatttccatacctgagaaaaaaatcattgcaggcgatgttagactgtca |
14488230 |
T |
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| Q |
114 |
acaactattttatttgtggtgtgtgagactttcttgttttttattccattttaaagaaattaaattaacaatgaaaaagtacaaacaagggaagaaggag |
213 |
Q |
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| T |
14488229 |
acaactattttatttgtggtgtgtgagactttcttgttttttattctattttaaagaaattaaattaacaatgaaaaagtacaaacaagggaagaaggag |
14488130 |
T |
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| Q |
214 |
aattcgggaatgtcaatcctatgttgttgctcatggaggtgagtgggatggaggagagagaatgataattgaagatggtgtgtaaaaagatatagt |
309 |
Q |
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| T |
14488129 |
aattcgggaatgtcaatcctatgttgttgctcatggaggtgagtgggatggaggagagagaatgataattgatgatggtgtgtaaaaagatatagt |
14488034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 301
Target Start/End: Complemental strand, 573669 - 573492
Alignment:
| Q |
116 |
aactattttatttgtggtgtgtgagactttcttgttttttattccattttaaagaaattaaattaacaatgaaaaagtacaaacaagggaagaaggagaa |
215 |
Q |
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| T |
573669 |
aactattttatctgtggtatgtggaactttcttgttttttattttattttaaagaaattaaattaacaatg-aaaagtacaaacaagggaagaagtagaa |
573571 |
T |
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| Q |
216 |
ttcgggaatgtcaatcctatgttgttgctcatggaggtgagtgggatggaggagagagaatgataattgaagatggtgtgtaaaaa |
301 |
Q |
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| T |
573570 |
tttgggacagt------tgagttgttgctcatggaggtgagtgagatggaggggagagaatgataattgatgat-gtgtgtaaaaa |
573492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 573830 - 573776
Alignment:
| Q |
20 |
gtataaaaaatcatagaaacaaagatgaagaacaaaggttttctagatttccata |
74 |
Q |
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| T |
573830 |
gtatagaaaatcggagaaacaaagatgaagaacaaagggtttctagatttccata |
573776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 573728 - 573676
Alignment:
| Q |
22 |
ataaaaaatcatagaaacaaagatgaagaacaaag-gttttctagatttccata |
74 |
Q |
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| T |
573728 |
ataaaaaatcatagaaacaaagatgaagaacaaagagttttc-agatttccata |
573676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 141 - 301
Target Start/End: Complemental strand, 49244828 - 49244676
Alignment:
| Q |
141 |
actttcttgttttttattccattttaaagaaattaaattaacaatgaaaaagtacaaacaagggaagaaggagaattcgggaatgtcaatcctatgttgt |
240 |
Q |
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| T |
49244828 |
actttcttgttttttattttattttaaagaaattaaattaacaatg-aaaagtacaaacaagggaagaaatagaatttgggaccgtgga------gttgt |
49244736 |
T |
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| Q |
241 |
tgctcatggaggtgagtgggatggaggagagagaatgataattgaagatggtgtgtaaaaa |
301 |
Q |
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| T |
49244735 |
tgctcatggaggtgagtgggatggaggggagggaatgataattgatgat-gtgtgtaaaaa |
49244676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 49244884 - 49244844
Alignment:
| Q |
34 |
agaaacaaagatgaagaacaaaggttttctagatttccata |
74 |
Q |
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| T |
49244884 |
agaaacaaagatgaagaacaaagggtttccagatttccata |
49244844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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