View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19897_low_31 (Length: 279)

Name: NF19897_low_31
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19897_low_31
NF19897_low_31
[»] chr1 (4 HSPs)
chr1 (11-221)||(17115017-17115227)
chr1 (17-109)||(13062241-13062333)
chr1 (30-92)||(41035296-41035358)
chr1 (13-82)||(49492139-49492208)
[»] chr3 (6 HSPs)
chr3 (13-154)||(51524555-51524697)
chr3 (15-82)||(16892870-16892937)
chr3 (19-81)||(31163384-31163446)
chr3 (33-109)||(3395892-3395968)
chr3 (9-79)||(21850790-21850859)
chr3 (33-108)||(29346559-29346634)
[»] chr8 (5 HSPs)
chr8 (13-146)||(27787077-27787210)
chr8 (37-99)||(8831551-8831613)
chr8 (13-112)||(28226021-28226120)
chr8 (17-82)||(29368878-29368943)
chr8 (33-86)||(400044-400097)
[»] chr2 (1 HSPs)
chr2 (13-107)||(30179898-30179992)
[»] chr4 (6 HSPs)
chr4 (17-146)||(6659176-6659305)
chr4 (17-109)||(37049758-37049850)
chr4 (41-109)||(19852209-19852277)
chr4 (13-82)||(12580085-12580154)
chr4 (41-109)||(16594096-16594164)
chr4 (42-72)||(16832477-16832507)
[»] chr7 (2 HSPs)
chr7 (34-92)||(19408148-19408206)
chr7 (13-102)||(26449794-26449883)
[»] chr6 (2 HSPs)
chr6 (17-109)||(25167601-25167693)
chr6 (14-82)||(10989776-10989844)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 17115017 - 17115227
Alignment:
Q  11 cagagagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17115017 cagagagagggtttggaaccatgaaccaagatttggcttgaagagagcttgtcatttgtcaaactagcatagctggcagttacaagttgcggtataggaa 17115116  T
Q  111 catttccatacattgattgatgagaggtgtttttgtaagagtaacaagtgcgataaataaactggcgacaacacgtcaactgaatccaaagccttagacg 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  17115117 catttgcatacattgattgatgagaggtgtttttgtaagagtaacaagtgcgataaataaactggcgacaacacatcaactgaatccaaagccttagatg 17115216  T
Q  211 tagacacagaa 221  Q
    |||||||||||    
T  17115217 tagacacagaa 17115227  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 13062241 - 13062333
Alignment:
Q  17 gagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 109  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||  ||||||| |||||||||||| ||||| | ||||||| ||||||    
T  13062241 gaggatttggaagcaagaaccaagatttggcttgaagggagcttgtcaactgtcaaattagcatagctggtagttataggttgcggcatagga 13062333  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 41035296 - 41035358
Alignment:
Q  30 catgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagtta 92  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||| |||||| || |||||    
T  41035296 catgaaccaatatttggcttgaagggagtttgtcacttgtcaaactatcatagcgggtagtta 41035358  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 49492139 - 49492208
Alignment:
Q  13 gagagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 82  Q
    |||||||||||||||  || || ||||| ||||  ||| ||||||||||||||||||||||||| |||||    
T  49492139 gagagagggtttggaggcaggagccaagttttgttttggagggagcttgtcacttgtcaaactatcatag 49492208  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 51524697 - 51524555
Alignment:
Q  13 gagagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaaca 112  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| | ||||| |||| ||||    
T  51524697 gagagagggtttggaaacatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactatcatagcgggtagttacaggctgcggcatagaaaca 51524598  T
Q  113 tttccatacattgattgatgagaggtgtttttgt-aagagtaa 154  Q
     || || || | ||||||| ||| |||||||||| ||||||||    
T  51524597 gttgcagacgtagattgataagatgtgtttttgtcaagagtaa 51524555  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 16892937 - 16892870
Alignment:
Q  15 gagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 82  Q
    |||||||||||||  ||||||||||  ||||| ||||||||||||||||||||||||||||| |||||    
T  16892937 gagagggtttggaggcatgaaccaaattttggtttgaagggagcttgtcacttgtcaaactatcatag 16892870  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 31163384 - 31163446
Alignment:
Q  19 gggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcata 81  Q
    |||||| ||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  31163384 gggtttagaagcaggaaccaaggtttggtttgaagggagcttgtcacttgtcaaactagcata 31163446  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 3395892 - 3395968
Alignment:
Q  33 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 109  Q
    ||||||| |||||||||||||||||||||  | ||||||||||||||||||| | ||||| |  |||||||||||||    
T  3395892 gaaccaacatttggcttgaagggagcttgctatttgtcaaactagcatagctagtagttatagcttgcggtatagga 3395968  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 21850790 - 21850859
Alignment:
Q  9 agcagagagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagca 79  Q
    ||||||||| |||||||||| |||||| || | ||||||||||| |||| |||||||||||||||||||||    
T  21850790 agcagagag-gggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagca 21850859  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 29346634 - 29346559
Alignment:
Q  33 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagg 108  Q
    |||||||| |||||||||||||||||||||||  |||||||  ||||||||||| || || | ||||||| |||||    
T  29346634 gaaccaaggtttggcttgaagggagcttgtcagctgtcaaataagcatagctggtaggtataggttgcggcatagg 29346559  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 27787077 - 27787210
Alignment:
Q  13 gagagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaaca 112  Q
    |||||| |||||| || |||||| ||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||| | ||||| |||| ||||    
T  27787077 gagagacggtttgaaaacatgaaacaagatttggcatgaagggagcttgtcacttgtcaaactatcatagcaggtagttacaggctgcggcatagaaaca 27787176  T
Q  113 tttccatacattgattgatgagaggtgtttttgt 146  Q
     || || |||| ||||||||||||||||||||||    
T  27787177 attgcagacatagattgatgagaggtgtttttgt 27787210  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 8831551 - 8831613
Alignment:
Q  37 caagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  8831551 caagatttggcttgaagggagcttgtcacttgtcaaactagcatagttggtagttacaggttg 8831613  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 28226021 - 28226120
Alignment:
Q  13 gagagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaaca 112  Q
    |||||| | ||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||||| ||| ||||||| ||||||| |||||||||    
T  28226021 gagagatgatttggaagcaggagccatggtttggcatgaagggatcttttcacttgtcaaactagcatagttggtagttacatgttgcggcataggaaca 28226120  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 29368943 - 29368878
Alignment:
Q  17 gagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 82  Q
    |||| ||||||| ||||||||||  ||||||||||||||||||| |||  ||||||||||||||||    
T  29368943 gaggatttggaagcatgaaccaaagtttggcttgaagggagcttatcagctgtcaaactagcatag 29368878  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 400044 - 400097
Alignment:
Q  33 gaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctgg 86  Q
    |||||||  ||||||||||||| ||| |||| ||||||||||||||||||||||    
T  400044 gaaccaaagtttggcttgaaggtagcgtgtctcttgtcaaactagcatagctgg 400097  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 30179992 - 30179898
Alignment:
Q  13 gagagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatag 107  Q
    ||||||||| |||||| ||  |||||||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| ||||    
T  30179992 gagagagggattggaagcagaaaccaagatttgtcttgaagggagcttgtcacttgttcaactagcatagctggtagttacaagttgcggcatag 30179898  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 6659176 - 6659305
Alignment:
Q  17 gagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtataggaacatttc 116  Q
    |||||||||||| |  ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||   ||||||| | ||||  |||  || | ||     
T  6659176 gagggtttggaagccggaaccaagatttggcttgaagagagcttgtcacttatcaaactagcatatctcatagttacagggtgcgacataaaaagagttg 6659275  T
Q  117 catacattgattgatgagaggtgtttttgt 146  Q
    ||||||| ||||||||||||||||||||||    
T  6659276 catacatagattgatgagaggtgtttttgt 6659305  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 37049850 - 37049758
Alignment:
Q  17 gagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 109  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||  |||||||||||||||||| | ||||| | |||| || ||||||    
T  37049850 gaggatttggaagcaggaaccaagatttggcttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcatagga 37049758  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 19852277 - 19852209
Alignment:
Q  41 atttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 109  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||| || ||||||    
T  19852277 atttggcttgaagggtgcttgtcacttgtcaaactagcataactggtagttacaggttgaggcatagga 19852209  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 12580085 - 12580154
Alignment:
Q  13 gagagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 82  Q
    ||||||||||||| |  ||||||||||  ||||| ||||||||||||||||||||||||||||| |||||    
T  12580085 gagagagggtttgaaggcatgaaccaaattttggtttgaagggagcttgtcacttgtcaaactatcatag 12580154  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 16594096 - 16594164
Alignment:
Q  41 atttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 109  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||| | ||||| |||| || ||||||    
T  16594096 atttggcttgatgggtgcttgtcacttgtcaaactagcataactggtaattacaggttgaggcatagga 16594164  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 72
Target Start/End: Original strand, 16832477 - 16832507
Alignment:
Q  42 tttggcttgaagggagcttgtcacttgtcaa 72  Q
    |||||||||||||||||||||||||||||||    
T  16832477 tttggcttgaagggagcttgtcacttgtcaa 16832507  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 19408148 - 19408206
Alignment:
Q  34 aaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagtta 92  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  19408148 aaccaagatttggcttgaagggagcttgtcagttgtcaaattagcatagctggtagtta 19408206  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 26449794 - 26449883
Alignment:
Q  13 gagagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcgg 102  Q
    |||||||||||||||   | |||||||| ||||| ||||||||||||||||||||||||||||| |||||  || ||||||| |||||||    
T  26449794 gagagagggtttggaggtaggaaccaagttttggtttgaagggagcttgtcacttgtcaaactatcatagtaggtagttacaggttgcgg 26449883  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 25167693 - 25167601
Alignment:
Q  17 gagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatagctggcagttacaagttgcggtatagga 109  Q
    |||| ||||||| || ||||||||||||| ||||||||||||||||||  |||||||||||||||||| | ||||| | |||| || ||||||    
T  25167693 gaggatttggaagcaggaaccaagatttgacttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcatagga 25167601  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 10989844 - 10989776
Alignment:
Q  14 agagagggtttggaaccatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 82  Q
    |||||||  |||||| || |||||||  ||||| ||||||||||||||||| |||||||||||||||||    
T  10989844 agagaggagttggaagcaggaaccaaagtttggtttgaagggagcttgtcaattgtcaaactagcatag 10989776  T

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