View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_low_34 (Length: 248)
Name: NF19897_low_34
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4366611 - 4366380
Alignment:
| Q |
1 |
taaacctaattaatgaatttcttgattgagtctgtgtctttctgtttcagactttataaatgcccaaacaatgcctaaaatgatcatacccaacaatgtt |
100 |
Q |
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| T |
4366611 |
taaacctaattaatgaatttcttgattgagtctgtgtctttctgtttcagactttataaatgcccaaacaatgcctaaaaagatcatacccaacaatgtt |
4366512 |
T |
|
| Q |
101 |
gttgaagtggttttgaagcattgcatttcacttgatcttaaattacatggacaagatatagtttattgtaaacattgtgataatgtagtaaccggcggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4366511 |
gttgaagtggttttgaagcattgcatttcacttgatcttaaactatatgaacaagatatagtttattgtaaacattgtgataatgtagtaaccggcggga |
4366412 |
T |
|
| Q |
201 |
tttactgctttatatgtcacataactggaatg |
232 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
4366411 |
tttactggtttatatgtcacataactggaatg |
4366380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4371376 - 4371233
Alignment:
| Q |
1 |
taaacctaattaatgaatttcttgattgagtct--gtgtctttctgtttcagactttataaatgcccaaacaatgcctaaaatgatcatacccaacaatg |
98 |
Q |
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||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
4371376 |
taaacctaattcatgagtttcttgattggttctctgtgtctttctgtttcagactttataaatgcccaaacaatgccttaaaagatcatacccaacaatg |
4371277 |
T |
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| Q |
99 |
ttgttgaagtggttttgaagcattgcatttcacttgatcttaaa |
142 |
Q |
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| T |
4371276 |
ttgttgatgttattttgaagcattgcatttcacttgatcttaaa |
4371233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 4361132 - 4361030
Alignment:
| Q |
96 |
atgttgttgaagtggttttgaagcattgcatttcacttgatcttaaattacatggacaagatatagtttattgtaaacattgtgataatgtagtaaccgg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
4361132 |
atgttgttgaagtggttttgaagcattgcatttcacttgatcttaaattacatggacaagatatagtttattgtaaatattgtgataatgttgtaaccgg |
4361033 |
T |
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| Q |
196 |
cgg |
198 |
Q |
| |
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||| |
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| T |
4361032 |
cgg |
4361030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 4370885 - 4370805
Alignment:
| Q |
151 |
acaagatatagtttattgtaaacattgtgataatgtagtaaccggcgggatttactgctttatatgtcacataactggaat |
231 |
Q |
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| T |
4370885 |
acaagatatagtttattgtaaatattgtgacaatgtagtaaccgtcgggttttaccgatttgtatgtcacttaattggaat |
4370805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 5724464 - 5724516
Alignment:
| Q |
71 |
atgcctaaaatgatcatacccaacaatgttgttgaagtggttttgaagcattg |
123 |
Q |
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| T |
5724464 |
atgcctaaaaagataataccaaacaatgttgttgatgttgttttgaagcattg |
5724516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 7035397 - 7035456
Alignment:
| Q |
13 |
atgaatttcttgattgagtctgtgtctttctgtttcagactttataaatgcccaaacaat |
72 |
Q |
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||||||||||||||||| | |||| |||||||| ||| ||||||||||| ||||||||| |
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| T |
7035397 |
atgaatttcttgattgattatgtgcttttctgttccaggctttataaatggccaaacaat |
7035456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 30795707 - 30795761
Alignment:
| Q |
18 |
tttcttgattgagtctgtgtctttctgtttcagactttataaatgcccaaacaat |
72 |
Q |
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|||||||||||| |||||| |||| |||||| ||||||||||||||||||||| |
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| T |
30795707 |
tttcttgattgattctgtgcttttcactttcaggctttataaatgcccaaacaat |
30795761 |
T |
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