View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_low_36 (Length: 241)
Name: NF19897_low_36
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 2357678 - 2357887
Alignment:
| Q |
9 |
agcaaaggcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaacc |
108 |
Q |
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| T |
2357678 |
agcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaacaagttggtgtaccttcaagcgataatcaaagaaacc |
2357777 |
T |
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| Q |
109 |
ctaatggctaagattatatccagctggtcctctctctgcacctcgtgagtttaccaaaaattgcaacataggtggttatgatgtcataaaaggaactcga |
208 |
Q |
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| T |
2357778 |
ctaa-------gattatatccagttggtcctctctctgcacctcgtgagtttaccgaaaattgtaacataggtggttatgatgtcataaaaggaactcga |
2357870 |
T |
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| Q |
209 |
ctaatcttaaatctttg |
225 |
Q |
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| T |
2357871 |
ctaatcttaaatctttg |
2357887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 2363033 - 2363096
Alignment:
| Q |
49 |
tgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
112 |
Q |
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| T |
2363033 |
tgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaacactaa |
2363096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 4305700 - 4305794
Alignment:
| Q |
18 |
agaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
112 |
Q |
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| T |
4305700 |
agaacttgacatccaagttggcaaagagaggtgtgtaaaagagtcggatatagacaagttggtataccttcaagcgatagtcaaagaaaccctaa |
4305794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 4305852 - 4305889
Alignment:
| Q |
177 |
taggtggttatgatgtcataaaaggaactcgactaatc |
214 |
Q |
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| T |
4305852 |
taggtggttatgatgtcaaaaaaggaactagactaatc |
4305889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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