View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19897_low_5 (Length: 523)
Name: NF19897_low_5
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Complemental strand, 36725428 - 36724936
Alignment:
| Q |
15 |
gggcgagatggagaataggaagaggtgtgaatatcccgttgtttggcatgtcatggctaaatgagggaatgnnnnnnnnacaactgatagtcttatttac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
36725428 |
gggcgagatggagaataggaagaggtgtgaatatcccgttgtttggcatgtcatggctaaatgatgggatgtttttct-acaactgatagtcttatttac |
36725330 |
T |
|
| Q |
115 |
gcgtctttagctcatatgaaggtaaaggatattcttgatcaatcctccaaggtatggaattctcctttaatttataatcnnnnnnnatcaaaacacggtc |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36725329 |
gcgtctttagctcatgtgaaggtaaaggatattcttgatcaatcctccaaggtatggaattctcctttaatttataatctttttt-atcaaaacacggtc |
36725231 |
T |
|
| Q |
215 |
cagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggcaagtactcggtgcagagtgcctat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
36725230 |
cagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggaaagtactcagtgcagtgtgcctat |
36725131 |
T |
|
| Q |
315 |
agaatatgtgttaatgaaattgctaataacacccatttgcatttaccagatcattggaatctagtttggaaactcaaagttccacctaaaataaaaaatc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36725130 |
agaatatgtgttaatgaaattgctaataacacctatttgcatttactggatcattggaatctagtttggaaactcaaagttccacctaaaataaaaaatc |
36725031 |
T |
|
| Q |
415 |
ttgtttggcgt--gtgtcgttgttgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgtaatatgtggaagt |
507 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36725030 |
ttgtttggcgtgtgtgtcgttgctgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgtaatatgtggaagt |
36724936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 507
Target Start/End: Original strand, 716721 - 716793
Alignment:
| Q |
435 |
ttgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgtaatatgtggaagt |
507 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| || ||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
716721 |
ttgttttccaacatgagcacacctaattagtagataggttcattgtccaatagattgtgtaatgtgtgaaagt |
716793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 96 - 412
Target Start/End: Original strand, 8266464 - 8266782
Alignment:
| Q |
96 |
aactgatagtcttatttacgcgtctttagctcatatgaaggt-aaag--gatattcttgatcaatcctccaaggtatggaattctcctttaatttataat |
192 |
Q |
| |
|
||||||||| | ||||||||| ||||| |||||| ||||||| |||| ||||| ||| | |||||||||| |||||||||| ||| ||||||||| ||| |
|
|
| T |
8266464 |
aactgatagccctatttacgcatctttcgctcatgtgaaggtgaaagatgatatccttaaacaatcctccagggtatggaatgctcatttaatttacaat |
8266563 |
T |
|
| Q |
193 |
cnnnnnnnatcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggcaa |
292 |
Q |
| |
|
| ||||||| || ||| ||||| |||||||| | ||||||| || ||||| |||| |||||||||||||||||| ||| |||||||||| || |
|
|
| T |
8266564 |
ctttttttatcaaaatacttcccaactgattttgaatacacatttacaatctctggttaatgaagataagttgatttggaaggctg-aaaagaatggtaa |
8266662 |
T |
|
| Q |
293 |
gtactcggtgcagagtgcctatagaatatgtgttaatgaaattgctaataacacccatttgcatttaccagatcattggaatctagtttggaaactcaaa |
392 |
Q |
| |
|
|| |||||| |||||||||||||||||||| | ||||||||||||||| | ||||||||| ||||| || ||| ||| ||||||||||||||||| |
|
|
| T |
8266663 |
ctattcggtgtgtagtgcctatagaatatgtgtaagtgaaattgctaataattctcatttgcatataccatgtcgttgaaatttagtttggaaactcaaa |
8266762 |
T |
|
| Q |
393 |
gttccacctaaaataaaaaa |
412 |
Q |
| |
|
|| | |||||| |||||||| |
|
|
| T |
8266763 |
gtcctacctaagataaaaaa |
8266782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 29713826 - 29713912
Alignment:
| Q |
201 |
atcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatg |
288 |
Q |
| |
|
|||| ||||||| ||||| || |||||||||||||||||| ||||||||| || |||||||||||||||||| || |||||||||| |
|
|
| T |
29713826 |
atcataacacggctcagcttatattgaatactcctttacaaaatttggttgaggaagataagttgatttggaaggct-gaaaagaatg |
29713912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 33907552 - 33907504
Alignment:
| Q |
376 |
tagtttggaaactcaaagttccacctaaaataaaaaatcttgtttggcg |
424 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
33907552 |
tagtgtggaagctcaaagtgccacctaaaataaaaaatctaatttggcg |
33907504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University