View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19897_low_7 (Length: 493)

Name: NF19897_low_7
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19897_low_7
NF19897_low_7
[»] chr8 (7 HSPs)
chr8 (205-489)||(41660110-41660399)
chr8 (116-154)||(41660450-41660488)
chr8 (15-88)||(35759187-35759260)
chr8 (18-115)||(41092172-41092269)
chr8 (15-88)||(41348171-41348244)
chr8 (47-89)||(14197684-14197726)
chr8 (47-87)||(30846043-30846083)
[»] chr2 (19 HSPs)
chr2 (1-115)||(14487930-14488044)
chr2 (47-125)||(7994045-7994122)
chr2 (47-87)||(37996564-37996604)
chr2 (18-116)||(40992221-40992319)
chr2 (47-87)||(16903878-16903918)
chr2 (47-87)||(30899417-30899457)
chr2 (60-108)||(41519918-41519966)
chr2 (48-87)||(6610025-6610064)
chr2 (48-87)||(15562022-15562061)
chr2 (48-115)||(30545417-30545483)
chr2 (47-89)||(3705362-3705404)
chr2 (48-118)||(36475776-36475846)
chr2 (18-115)||(16426553-16426650)
chr2 (16-85)||(36476696-36476764)
chr2 (47-87)||(7994554-7994594)
chr2 (47-87)||(15561568-15561608)
chr2 (47-87)||(16903425-16903465)
chr2 (8-108)||(36390964-36391063)
chr2 (51-115)||(44154276-44154340)
[»] chr1 (16 HSPs)
chr1 (5-98)||(573398-573491)
chr1 (47-89)||(48594206-48594248)
chr1 (47-89)||(48598817-48598859)
chr1 (47-115)||(8560839-8560907)
chr1 (47-87)||(38328867-38328907)
chr1 (47-87)||(43755876-43755916)
chr1 (8-88)||(49611501-49611581)
chr1 (47-89)||(2820983-2821025)
chr1 (47-89)||(2821470-2821512)
chr1 (47-89)||(12800451-12800493)
chr1 (47-89)||(28371684-28371726)
chr1 (21-115)||(42384109-42384202)
chr1 (47-87)||(32537672-32537712)
chr1 (51-87)||(38468933-38468969)
chr1 (47-87)||(38469266-38469306)
chr1 (47-115)||(51987827-51987895)
[»] chr3 (26 HSPs)
chr3 (5-80)||(49244600-49244675)
chr3 (48-114)||(20313412-20313478)
chr3 (47-108)||(36992154-36992214)
chr3 (47-108)||(37017594-37017654)
chr3 (47-108)||(45297556-45297616)
chr3 (47-87)||(5113225-5113265)
chr3 (47-87)||(20586099-20586139)
chr3 (47-87)||(20586565-20586605)
chr3 (47-87)||(24394715-24394755)
chr3 (47-87)||(26006173-26006213)
chr3 (47-87)||(43104758-43104798)
chr3 (47-87)||(45000808-45000848)
chr3 (66-109)||(43786177-43786220)
chr3 (47-89)||(929936-929978)
chr3 (47-89)||(930414-930456)
chr3 (47-85)||(5113689-5113727)
chr3 (47-89)||(11442136-11442178)
chr3 (47-89)||(14788581-14788623)
chr3 (47-89)||(32474443-32474485)
chr3 (47-89)||(42258042-42258084)
chr3 (47-89)||(43521102-43521144)
chr3 (47-108)||(33968188-33968248)
chr3 (15-88)||(46719688-46719761)
chr3 (47-87)||(8326509-8326549)
chr3 (47-87)||(26006759-26006799)
chr3 (47-87)||(45000342-45000382)
[»] scaffold0180 (1 HSPs)
scaffold0180 (8-88)||(23033-23113)
[»] scaffold0155 (1 HSPs)
scaffold0155 (18-88)||(17366-17436)
[»] chr7 (12 HSPs)
chr7 (18-115)||(41224794-41224891)
chr7 (48-115)||(29006347-29006414)
chr7 (48-115)||(29007180-29007247)
chr7 (47-108)||(30414188-30414248)
chr7 (47-108)||(33140275-33140335)
chr7 (15-88)||(44896073-44896146)
chr7 (47-87)||(25137439-25137479)
chr7 (18-88)||(29314608-29314678)
chr7 (47-88)||(42901117-42901158)
chr7 (47-87)||(4180319-4180359)
chr7 (47-87)||(20560262-20560302)
chr7 (47-87)||(25137906-25137946)
[»] chr5 (12 HSPs)
chr5 (47-87)||(24027667-24027707)
chr5 (67-118)||(10022133-10022184)
chr5 (47-87)||(3595804-3595844)
chr5 (47-87)||(7858354-7858394)
chr5 (47-87)||(8321368-8321408)
chr5 (47-87)||(12330175-12330215)
chr5 (47-87)||(12330643-12330683)
chr5 (48-87)||(8320902-8320941)
chr5 (61-115)||(9142047-9142101)
chr5 (15-88)||(33283192-33283264)
chr5 (47-87)||(3596274-3596314)
chr5 (47-87)||(35106900-35106940)
[»] chr4 (15 HSPs)
chr4 (15-88)||(52758658-52758731)
chr4 (47-87)||(5235401-5235441)
chr4 (47-87)||(20174997-20175037)
chr4 (47-87)||(39412792-39412832)
chr4 (1-88)||(11680303-11680390)
chr4 (1-88)||(11688582-11688669)
chr4 (47-88)||(19860356-19860397)
chr4 (51-88)||(31910581-31910618)
chr4 (16-89)||(53289499-53289572)
chr4 (47-108)||(54006735-54006796)
chr4 (47-108)||(54453102-54453163)
chr4 (48-108)||(232031-232090)
chr4 (47-87)||(6933848-6933888)
chr4 (47-87)||(6934483-6934523)
chr4 (48-88)||(25655620-25655660)
[»] scaffold0508 (2 HSPs)
scaffold0508 (47-87)||(4160-4200)
scaffold0508 (47-87)||(4605-4645)
[»] scaffold0022 (1 HSPs)
scaffold0022 (47-87)||(61601-61641)
[»] chr6 (8 HSPs)
chr6 (47-87)||(7635151-7635191)
chr6 (47-87)||(7635616-7635656)
chr6 (47-87)||(18290242-18290282)
chr6 (47-87)||(18290476-18290516)
chr6 (1-88)||(10608254-10608341)
chr6 (47-117)||(4310298-4310368)
chr6 (47-89)||(28983273-28983315)
chr6 (47-89)||(34717736-34717778)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 205 - 489
Target Start/End: Complemental strand, 41660399 - 41660110
Alignment:
Q  205 aaaattgatcgtttacactacattatata--aattttagggaaatgcattcataaaagagcaataatttgaacttacgaaccnnnnnnnnnn---gtgat 299  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||||||             |||||    
T  41660399 aaaattgatcgtttacactacattatatataaattttagggaaatgcattcattaaagagcaatgatttgaacttacgaaccaaaaaaaaaaaaggtgat 41660300  T
Q  300 tcgtctctaatggtagatgtgataaatgaacacataagtattgtttgtcttttagttttggatggttcacacgatcacaaaatataacataaaatcgaca 399  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41660299 tcgtctctaatgttagatgtgataaatgaacgcataagtattgtttgtcttttagttttggatggttcacacgatcacaaaatataacataaaatcgaca 41660200  T
Q  400 atgcaaccatgagcatagtttaaatgctaactgtgtgcatatatagaagaatataacataacataaacggctcatttgggggaaactaaa 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41660199 atgcaaccatgagcatagtttaaatgctaactgtgtgcatatatagaagaatataacataacataaacgtctcatttgggggaaactaaa 41660110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 41660488 - 41660450
Alignment:
Q  116 ctattttatagttggatttggcaaaattacgcctgcaat 154  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41660488 ctattttatagttggatttggcaaaattacgcctgcaat 41660450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 35759187 - 35759260
Alignment:
Q  15 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    ||||||| ||||||||| ||||| || || |  |||||||||||||||| ||||||||||||| |||| |||||    
T  35759187 gagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccatggtggggaaaaa 35759260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 41092269 - 41092172
Alignment:
Q  18 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    |||| ||||||||| |||||||| || |  ||| |||||||||||| ||||||| ||||| |||||||||| |  ||||||||| | |||||| ||||    
T  41092269 agaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttttccatggtgggaaaaaacaagcctttcccaaattaaatggcacc 41092172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 41348244 - 41348171
Alignment:
Q  15 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    ||||||| ||||||||| ||||| || || |  |||||||||||||||| ||||||||||||| |||| |||||    
T  41348244 gagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccatggtggggaaaaa 41348171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 14197726 - 14197684
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  14197726 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 14197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 30846083 - 30846043
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||| ||| |||||||||    
T  30846083 gatctaatggttaaaaactaactttcctatggtgggaaaaa 30846043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 14488044 - 14487930
Alignment:
Q  1 aaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  14488044 aaagatatagtgtagagagactatgataaaagtgtgttccataatcaatctaatggttaaaaagtaactttcccataatgggaaaaaagatccctttccc 14487945  T
Q  101 atactaaatgtcacc 115  Q
    |||||||||| ||||    
T  14487944 atactaaatgccacc 14487930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 7994122 - 7994045
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcaccctattttata 125  Q
    ||||||||||||||||| |||||||||||||||||||||||  |  ||||||||||||||||  ||||| | |||||||    
T  7994122 gatctaatggttaaaaactaactttcccatgatgggaaaaatta-gcctttcccatactaaacttcaccattttttata 7994045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 37996564 - 37996604
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  37996564 gatctaatggttaaaaactaactttcccatgatgggaaaaa 37996604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 40992319 - 40992221
Alignment:
Q  18 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcaccc 116  Q
    |||| ||||||||| |||||||| || |  ||| |||||||||||| ||||||||||||| | |||||||| |  ||||||||| | |||||| |||||    
T  40992319 agaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtaggaaaaaacaaacctttcccaaattaaatggcaccc 40992221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 16903878 - 16903918
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  16903878 gatctaatggttaaaaactaactttcccatggtgggaaaaa 16903918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 30899457 - 30899417
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  30899457 gatctaatggttaaaaactaactttcccatggtgggaaaaa 30899417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 41519918 - 41519966
Alignment:
Q  60 aaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    ||||| |||||||||||| ||||||||||  ||||||||||||||||||    
T  41519918 aaaaaaaactttcccatggtgggaaaaaacttccctttcccatactaaa 41519966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 6610025 - 6610064
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  6610025 atctaatggttaaaaactaactttcccatggtgggaaaaa 6610064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 15562022 - 15562061
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  15562022 atctaatggttaaaaactaactttcccatggtgggaaaaa 15562061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 30545417 - 30545483
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    ||||||||||||||||| ||||||||||| |||||||| ||  ||||||||||| | |||||| ||||    
T  30545417 atctaatggttaaaaaa-aactttcccatcatgggaaacaacttccctttcccaaattaaatggcacc 30545483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 3705404 - 3705362
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  3705404 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 3705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 36475846 - 36475776
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacccta 118  Q
    |||||| ||||||||||   |||||||||| |||||||||||  || ||||||||||||||  ||||||||    
T  36475846 atctaagggttaaaaaaaggctttcccatggtgggaaaaaagtaccatttcccatactaaacctcacccta 36475776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 16426650 - 16426553
Alignment:
Q  18 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    |||| ||||||||| ||| |||| || |  ||| |||||||||||| ||||||| ||||| |||||||||| |  ||||||||| | |||||| ||||    
T  16426650 agaccatgataaaattgtattccctacttaatcaaatggttaaaaattaacttttccatggtgggaaaaaacaagcctttcccaaattaaatggcacc 16426553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 36476696 - 36476764
Alignment:
Q  16 agagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaa 85  Q
    |||||||||||||||| |||||||| || |  |||||||||| || ||| | ||||||||||||||||||    
T  36476696 agagactatgataaaattgtgttccttatttaatctaatggtcaagaaa-atctttcccatgatgggaaa 36476764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 7994554 - 7994594
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  7994554 gatctaatggttaaaaactaactttcccatggtggaaaaaa 7994594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 15561608 - 15561568
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||| ||| |||||||||    
T  15561608 gatctaatggttaaaaactaactttccaatggtgggaaaaa 15561568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 16903465 - 16903425
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||| ||||| |||||||||    
T  16903465 gatctaatggttaaaaactaacttttccatggtgggaaaaa 16903425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 36391063 - 36390964
Alignment:
Q  8 tagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaa 107  Q
    |||||| |||||| || ||| ||| ||||||||  | | ||||||||||||||||  || |||||||||| ||||||| ||  |||||||||||| ||||    
T  36391063 tagtgttgagagaataggattaaaatgtgttcctcatttgatctaatggttaaaattta-ctttcccatggtgggaaacaacttccctttcccatgctaa 36390965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 44154340 - 44154276
Alignment:
Q  51 taatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    |||||||||||||| ||||||| ||| |||||||| ||  ||||||||||| | |||||| ||||    
T  44154340 taatggttaaaaaaaaactttcacatcatgggaaacaacttccctttcccaaattaaatggcacc 44154276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 573491 - 573398
Alignment:
Q  5 atatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttc 98  Q
    |||||||||| |||||||||||||||| |||||| | || | ||||||||||||||||||||||||  ||||||| |||||||||||| |||||    
T  573491 atatagtgtaaagagactatgataaaaatgtgtttcttagttgatctaatggttaaaaaataacttgtccatgataggaaaaaagatcactttc 573398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 48594206 - 48594248
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  48594206 gatctaatggtcaaaaactaactttcccatgatgggaaaaaag 48594248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 48598817 - 48598859
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  48598817 gatctaatggtcaaaaactaactttcccatgatgggaaaaaag 48598859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 8560907 - 8560839
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    ||||||||||| ||||||  ||||||||||||||||||| |||   ||||||||| | |||||||||||    
T  8560907 gatctaatggtcaaaaaaatactttcccatgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 38328867 - 38328907
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  38328867 gatctaatgattaaaaactaactttcccatgatgggaaaaa 38328907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 43755916 - 43755876
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  43755916 gatctaatggttaaaaactaactttcccatggtgggaaaaa 43755876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 49611501 - 49611581
Alignment:
Q  8 tagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    |||||| ||||||| ||| ||||| |||||||| || |  |||||||||  ||||| ||| ||||||||||||||||||||    
T  49611501 tagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaattttcccatgatgggaaaaaa 49611581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 2821025 - 2820983
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  2821025 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 2820983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 2821470 - 2821512
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  2821470 gatctaatggtcaaaaattaactttcccatggtgggaaaaaag 2821512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 12800451 - 12800493
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  12800451 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 12800493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 28371684 - 28371726
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  28371684 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 28371726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 42384109 - 42384202
Alignment:
Q  21 ctatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    ||||||||||||  |||||| || |  |||||||||| | |||| |||||||||||||| ||||| |||   |||||||||||||||||| ||||    
T  42384109 ctatgataaaagcatgttccttattaaatctaatggtcagaaaa-aactttcccatgataggaaacaagtatcctttcccatactaaatgccacc 42384202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 32537712 - 32537672
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  32537712 gatccaatggttaaaaactaactttcccatggtgggaaaaa 32537672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 38468969 - 38468933
Alignment:
Q  51 taatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  38468969 taatggttaaaaactaactttcccatggtgggaaaaa 38468933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 38469266 - 38469306
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  38469266 gatctaatggttaaaaactaactttcccatggtggaaaaaa 38469306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 51987895 - 51987827
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    ||||||||||||||||||  ||||||||||| ||||||| |||   ||||||||| | |||||| ||||    
T  51987895 gatctaatggttaaaaaaatactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 51987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 49244675 - 49244600
Alignment:
Q  5 atatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatg 80  Q
    |||||||||||||||||||||||||||| ||||||| || | ||||||||||||||||||||| ||  ||||||||    
T  49244675 atatagtgtagagagactatgataaaagcgtgttccttagttgatctaatggttaaaaaataatttgtccatgatg 49244600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 20313412 - 20313478
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcac 114  Q
    |||||||||| ||||   || |||||||||||||||||| |  ||||||||||||||||||||||||    
T  20313412 atctaatggtaaaaatccaattttcccatgatgggaaaatacttccctttcccatactaaatgtcac 20313478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 36992154 - 36992214
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    ||||||||||||||||| ||||||||||||| |||||||||  |  ||||||||||||||||    
T  36992154 gatctaatggttaaaaactaactttcccatggtgggaaaaatta-gcctttcccatactaaa 36992214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 37017594 - 37017654
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    ||||||||||||||||| ||||||||||||| |||||||||  |  ||||||||||||||||    
T  37017594 gatctaatggttaaaaactaactttcccatggtgggaaaaatta-gcctttcccatactaaa 37017654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 45297616 - 45297556
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    |||||||||||||||||| |||||||||||||||||||| ||    ||||||||||||||||    
T  45297616 gatctaatggttaaaaaa-aactttcccatgatgggaaacaactctcctttcccatactaaa 45297556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 5113265 - 5113225
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  5113265 gatctaatggttaaaaactaactttcccatggtgggaaaaa 5113225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 20586139 - 20586099
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  20586139 gatctaatggttaaaaactaactttcccatggtgggaaaaa 20586099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 20586565 - 20586605
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  20586565 gatctaatggttaaaaactaactttcccatggtgggaaaaa 20586605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 24394715 - 24394755
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  24394715 gatctaatggttaaaaactaactttcccatggtgggaaaaa 24394755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 26006213 - 26006173
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  26006213 gatctaatggttaaaaactaactttcccatggtgggaaaaa 26006173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 43104758 - 43104798
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  43104758 gatctaatggttaaaaactaactttcccattatgggaaaaa 43104798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 45000808 - 45000848
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  45000808 gatctaatggttaaaaactaactttcccatggtgggaaaaa 45000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 43786177 - 43786220
Alignment:
Q  66 aactttcccatgatgggaaaaaagatccctttcccatactaaat 109  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||    
T  43786177 aactttcccattatgggaaagaagctccctttcccatactaaat 43786220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 929978 - 929936
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  929978 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 929936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 930414 - 930456
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  930414 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 930456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 5113689 - 5113727
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaa 85  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  5113689 gatctaatggttaaaaactaactttcccatggtgggaaa 5113727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 11442136 - 11442178
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  11442136 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 11442178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 14788581 - 14788623
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||    
T  14788581 gatctaatggtcaaaaactaactttcccatgataggaaaaaag 14788623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 32474443 - 32474485
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  32474443 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 32474485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 42258042 - 42258084
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||    
T  42258042 gatctaatggtcaaaaactaactttccaatgatgggaaaaaag 42258084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 43521144 - 43521102
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  43521144 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 43521102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 33968248 - 33968188
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    ||||||||||| ||||||||  ||||||||| ||||||| ||| |||||||||||| |||||    
T  33968248 gatctaatggtcaaaaaatat-tttcccatggtgggaaacaagttccctttcccatgctaaa 33968188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 46719761 - 46719688
Alignment:
Q  15 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    ||||||| ||| ||||| |||||||| || |  |||||||||  ||||| |||||||||||||||| |||||||    
T  46719761 gagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttcccatgatgagaaaaaa 46719688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 8326549 - 8326509
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||| |||| | ||||||||||||||||||||    
T  8326549 gatctaatggttagaaaaaagctttcccatgatgggaaaaa 8326509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 26006759 - 26006799
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  26006759 gatctaatggtcaaaaactaactttctcatgatgggaaaaa 26006799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 45000382 - 45000342
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||  |||||||||    
T  45000382 gatctaatggttaaaaactaactttcccatagtgggaaaaa 45000342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 23033 - 23113
Alignment:
Q  8 tagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    |||||| ||||||| ||||||||| | |||||| || |  ||||||||||| |||| ||||||||||||||||||||||||    
T  23033 tagtgttgagagaccatgataaaattatgttccctatttaatctaatggttcaaaactaactttcccatgatgggaaaaaa 23113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 17436 - 17366
Alignment:
Q  18 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    |||| ||||||||| |||||||| || | |||| |||||||||||| ||||||||||||| ||||||||||    
T  17436 agaccatgataaaattgtgttccctatttgatcaaatggttaaaaactaactttcccatggtgggaaaaaa 17366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 41224794 - 41224891
Alignment:
Q  18 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    |||| ||||||||| |||||||| || |  ||| |||||||||||| ||||||||||||| |||||||||| |  ||||||||| | |||||| ||||    
T  41224794 agaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtgggaaaaaataagcctttcccaaattaaatggcacc 41224891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 29006414 - 29006347
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    |||||||||||||||| ||||||||||||| |||||||||| |  ||||||||| | |||||| ||||    
T  29006414 atctaatggttaaaaactaactttcccatggtgggaaaaaacaagcctttcccaaattaaatggcacc 29006347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 29007180 - 29007247
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    |||||||||||||||| ||||||||||||| |||||||||| |  ||||||||| | |||||| ||||    
T  29007180 atctaatggttaaaaactaactttcccatggtgggaaaaaacaagcctttcccaaattaaatgacacc 29007247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 30414248 - 30414188
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    ||||||||||||||||| ||||||||||||| |||||||||  |  ||||||||||||||||    
T  30414248 gatctaatggttaaaaactaactttcccatggtgggaaaaatta-gcctttcccatactaaa 30414188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 33140275 - 33140335
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||| |  |||||||||||||||    
T  33140275 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag-taactttcccatactaaa 33140335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 44896146 - 44896073
Alignment:
Q  15 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    ||||||| ||||||||| ||||| || || |  |||||||||||||||| ||||||||||||| |||| |||||    
T  44896146 gagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccatggtggggaaaaa 44896073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 25137479 - 25137439
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  25137479 gatctaatggttaaaaactaactttcccatggtgggaaaaa 25137439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 29314678 - 29314608
Alignment:
Q  18 agactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    |||| ||||||||| |||||||| || |  ||| |||||||||||| ||||||||||||| ||| ||||||    
T  29314678 agaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtggaaaaaaa 29314608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 42901117 - 42901158
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||    
T  42901117 gatctaatggtcaaaaactaactttcccatggtgggaaaaaa 42901158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 4180319 - 4180359
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||| ||||| ||||||||||||| |||||||||    
T  4180319 gatctaatggtcaaaaactaactttcccatggtgggaaaaa 4180359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 20560262 - 20560302
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||| ||||| ||||||||||||| |||||||||    
T  20560262 gatctaatggtcaaaaactaactttcccatggtgggaaaaa 20560302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 25137906 - 25137946
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  25137906 gatctaatggttaaaaactaattttcccatggtgggaaaaa 25137946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 24027667 - 24027707
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  24027667 gatctaatggttaaaaactaactttcccatgatgggaaaaa 24027707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 10022133 - 10022184
Alignment:
Q  67 actttcccatgatgggaaaaaagatccctttcccatactaaatgtcacccta 118  Q
    |||||||||| |||||||||||||  || |||||||||||||||||||||||    
T  10022133 actttcccatcatgggaaaaaagagtccattcccatactaaatgtcacccta 10022184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 3595844 - 3595804
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  3595844 gatctaatggttaaaaactaactttcccatggtgggaaaaa 3595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 7858394 - 7858354
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  7858394 gatctaatggttaaaaactaactttcccatggtgggaaaaa 7858354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 8321368 - 8321408
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  8321368 gatctaatggttaaaaactaactttcccatggtgggaaaaa 8321408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 12330215 - 12330175
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  12330215 gatctaatggttaaaaattaactttcccatggtgggaaaaa 12330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 12330643 - 12330683
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  12330643 gatctaatggttaaaaactaactttcccatggtgggaaaaa 12330683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 8320941 - 8320902
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  8320941 atctaatggttaaaaactaactttcccatggtgggaaaaa 8320902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 9142101 - 9142047
Alignment:
Q  61 aaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcacc 115  Q
    |||||| |||||||||| ||||||| ||  |||||||||||||||||||| ||||    
T  9142101 aaaatagctttcccatggtgggaaacaacttccctttcccatactaaatgccacc 9142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 33283264 - 33283192
Alignment:
Q  15 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    |||||| |||||||||| ||||||||  | | ||||||||||| |||||| | |||||||||||||||| ||||    
T  33283264 gagagagtatgataaaaatgtgttcctcatttgatctaatggtcaaaaaa-acctttcccatgatgggataaaa 33283192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 3596274 - 3596314
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  3596274 gatctaatggttaaaaactaattttcccatggtgggaaaaa 3596314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 35106940 - 35106900
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||| ||| ||||||||||||||||||||||| |||||||    
T  35106940 gatctgatgcttaaaaaataactttcccatgataggaaaaa 35106900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 52758658 - 52758731
Alignment:
Q  15 gagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    ||||||||||| ||||| |||||||| || |  |||||||||  ||||| |||||||||||||||| |||||||    
T  52758658 gagagactatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttcccatgatgagaaaaaa 52758731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 5235441 - 5235401
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  5235441 gatctaatggttaaaaactaactttcccatggtgggaaaaa 5235401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 20175037 - 20174997
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  20175037 gatctaatggttaaaaactaactttcccatggtgggaaaaa 20174997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 39412832 - 39412792
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  39412832 gatccaatggttaaaaactaactttcccatgatgggaaaaa 39412792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11680390 - 11680303
Alignment:
Q  1 aaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    |||||| |||||  ||||||| || |||| | |||||||| || |  |||||||||| ||||| ||||||||||||| ||||||||||    
T  11680390 aaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaa 11680303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11688669 - 11688582
Alignment:
Q  1 aaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    |||||| |||||  ||||||| || |||| | |||||||| || |  |||||||||| ||||| ||||||||||||| ||||||||||    
T  11688669 aaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaa 11688582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 19860397 - 19860356
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||    
T  19860397 gatctaatggtcaaaaactaactttcccatggtgggaaaaaa 19860356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 31910618 - 31910581
Alignment:
Q  51 taatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  31910618 taatggttaaaaactaactttcccatggtgggaaaaaa 31910581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 53289572 - 53289499
Alignment:
Q  16 agagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    |||||| ||||||||| ||||| || || |  |||||||| ||||||| ||||||||||||| |||| ||||||    
T  53289572 agagaccatgataaaattgtgtaccctatttaatctaatgattaaaaattaactttcccatgttggggaaaaag 53289499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 54006796 - 54006735
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    ||||| ||||| |||| | |||||||||||||||||||| ||  |||| |||||||||||||    
T  54006796 gatctgatggtcaaaagaaaactttcccatgatgggaaacaacttcccattcccatactaaa 54006735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 54453163 - 54453102
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    ||||| ||||||||||||||| ||| ||||||||||||| ||  |||| ||||||| |||||    
T  54453163 gatctgatggttaaaaaataatttttccatgatgggaaacaacttcccattcccatgctaaa 54453102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 232031 - 232090
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaa 108  Q
    |||||||||||||||  || |||||||||| ||||||| ||  ||||||||||||||||||    
T  232031 atctaatggttaaaattta-ctttcccatggtgggaaacaacttccctttcccatactaaa 232090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 6933888 - 6933848
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  6933888 gatctaatggttaaaaactaacttttccatgatggaaaaaa 6933848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 6934483 - 6934523
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  6934483 gatctaatggttaaaaactaactttcccatggtggaaaaaa 6934523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 25655620 - 25655660
Alignment:
Q  48 atctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    |||||||||| ||||| ||||||||||||| ||||||||||    
T  25655620 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 25655660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 4200 - 4160
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  4200 gatctaatggttaaaaactaactttcccatggtgggaaaaa 4160  T

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Target: scaffold0508; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 4605 - 4645
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  4605 gatctaattgttaaaaactaactttcccatgatggaaaaaa 4645  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 61641 - 61601
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  61641 gatctaatggtcaaaaactaactttcccatgatgggaaaaa 61601  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 7635191 - 7635151
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  7635191 gatctaatggttaaaaactaactttcccatggtgggaaaaa 7635151  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 7635616 - 7635656
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  7635616 gatctaatggttaaaaactaactttcccatggtgggaaaaa 7635656  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 18290282 - 18290242
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  18290282 gatctaatggttaaaaattaactttcccatggtgggaaaaa 18290242  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 18290476 - 18290516
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaa 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  18290476 gatctaatggttaaaaactaactttcccatggtgggaaaaa 18290516  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10608254 - 10608341
Alignment:
Q  1 aaagatatagtgtagagagactatgataaaagtgtgttccataatcgatctaatggttaaaaaataactttcccatgatgggaaaaaa 88  Q
    |||||| |||||  ||||||| || |||| | |||||||| || |  |||||||||| ||||| ||||||||||||| ||||||||||    
T  10608254 aaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaa 10608341  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 4310368 - 4310298
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaagatccctttcccatactaaatgtcaccct 117  Q
    ||||||||||||  |||| |||||||||||||||||| ||||  || ||| ||||||||||| | ||||||    
T  4310368 gatctaatggttttaaaaaaactttcccatgatgggacaaaacttcacttacccatactaaacgccaccct 4310298  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 28983273 - 28983315
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  28983273 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 28983315  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 34717736 - 34717778
Alignment:
Q  47 gatctaatggttaaaaaataactttcccatgatgggaaaaaag 89  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  34717736 gatctaatggtcaaaaactaactttcccatggtgggaaaaaag 34717778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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