View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19897_low_9 (Length: 467)
Name: NF19897_low_9
Description: NF19897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19897_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 74 - 451
Target Start/End: Complemental strand, 10225516 - 10225142
Alignment:
| Q |
74 |
agaaaaagcaatctaaagcattaaaagttcagtacataaaaaatcattgaacaatatggnnnnnnnnttccaaatcaaaatcagtacattacatttgttt |
173 |
Q |
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| T |
10225516 |
agaaaaagtaatctaaagtattaaaagttcagtacataaaaaatcattgaacaatatggaaaaaaaattccaaatcaaaatcagtacattacatttgttt |
10225417 |
T |
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| Q |
174 |
agcagttcatatcccaaaaaacaaccttcgtctagtaacctagttctgtacattcaaaagtaaaagttaacctcaatctataaataaatcaaagtcatgg |
273 |
Q |
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| T |
10225416 |
agcagttcatatcccaaaaaacaaccttcgtctagtaacctagttctgtacattcaaaagtaaa-gttaacctcaatctataaataaatcaaagtcatgg |
10225318 |
T |
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| Q |
274 |
cagtgaaagcaaaacaagtagaagtatagatattttctcttctcttttgttttgatttaaactttgcccctgaaagtatattcttttgtagtaaaatttc |
373 |
Q |
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| T |
10225317 |
cagtgaaagcaaaacaagtagaagtatagatattttctcttctcttttgttttgatttaaactttgcccctgaaattatattcttttgtagtaaaatttc |
10225218 |
T |
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| Q |
374 |
aactccattatacttttttacttggaagataaaacatactgtttttgaattaatatcctttaccatcaatgattttat |
451 |
Q |
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| T |
10225217 |
aactccattatac--ttttacttggaagataaaacatactgtttttgaattaatatcctttaccatcaatgattttat |
10225142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 10225621 - 10225579
Alignment:
| Q |
32 |
tagctacaaactaattaaagtttctctaatctgattacagcca |
74 |
Q |
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| T |
10225621 |
tagctacaaactgattaaagtttctctaatctgattacagcca |
10225579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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