View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_11 (Length: 504)
Name: NF19898_high_11
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 494
Target Start/End: Original strand, 5778427 - 5778910
Alignment:
| Q |
11 |
cacagacaaggacacacagcagcacatgtgattacattcaattgatttattgtctcaaattaccactagttttgatgtataagtgtcattgtcagtgacg |
110 |
Q |
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| T |
5778427 |
cacagacaaggacacacagcagcacatgtgattacattcaattgatttattgtctcaaattaccactagtttcgatgtataagtgtcattgtcagtgacg |
5778526 |
T |
|
| Q |
111 |
tgtctgttgttcatgtatgtctcactacttcatagtcttttatgacaaatatcttgtatataacaatgacaaaacaaatagaatcggatccggattatgt |
210 |
Q |
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| T |
5778527 |
tgtctattgttcatgtatgtgtcactgcttcatagtcttttatgacaaatatcttgtatataacaatgacaaaacaaatagaatcggatccggattatgt |
5778626 |
T |
|
| Q |
211 |
gcggccaacggatcatgacatcatacacttgccgcagtcacgcaatctggactatttgatcaagatttaactactcgttttccaactttgtaaatcagat |
310 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5778627 |
gcggccaacggatcatgacaacatacatttgccgcagtcacgtaatctgaactatttgatcaagatttaactactcgttttccaactttgtaaatcagat |
5778726 |
T |
|
| Q |
311 |
tgcaaagtaagttggaatgtgagtcgtcaactcttgatcaggctgtctggattgcttgactacgatttcttatctacaaagaatccaaattcaataagat |
410 |
Q |
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| T |
5778727 |
tgcaaagtaagttggaatgtgagtcgtcaactcttgatcaggctgtctggattgcttgactacgatttcctatctacaaagaatccaaattcaataagat |
5778826 |
T |
|
| Q |
411 |
cattacccttccgaagacaacaaaatatcttgaagcactgatttaaatgctctggcagctgttgatgcaacacagattataaat |
494 |
Q |
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| T |
5778827 |
cattacccttccgaagacaacaaaatatcttgaagcactgatttaaatgctctggcagctgttgatgcaacacagattataaat |
5778910 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 28322291 - 28322244
Alignment:
| Q |
33 |
cacatgtgattacattcaattgatttattgtctcaaattaccactagt |
80 |
Q |
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||||||||||||||||||||| ||| ||| |||||||||| ||||||| |
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| T |
28322291 |
cacatgtgattacattcaattaattcattttctcaaattatcactagt |
28322244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 5461181 - 5461217
Alignment:
| Q |
36 |
atgtgattacattcaattgatttattgtctcaaatta |
72 |
Q |
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|||||||||||||||||| ||||||| |||||||||| |
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| T |
5461181 |
atgtgattacattcaattaatttattatctcaaatta |
5461217 |
T |
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