View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_14 (Length: 452)
Name: NF19898_high_14
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 438
Target Start/End: Original strand, 22601998 - 22602427
Alignment:
| Q |
11 |
aatgaatcttatccttttcagaaacctcataaagaaatccccattctttttggtataattaatagccagagtcttcggttttaaatgacggttgcagcag |
110 |
Q |
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| T |
22601998 |
aatgaatcttatccttttcagaaacctcataaagaaatccccattctttttggtataattaatagctagagtcttcggttttaaattacgattgcagccg |
22602097 |
T |
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| Q |
111 |
cagtcttggtcacacgaggaacctcaatggagccacaaatacggttacaataccgttgtagagacctctaaaacctttatattgtggccttaattgcggc |
210 |
Q |
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| T |
22602098 |
cagtctcggtcacactaggaacctcaatgaagccagaaatgtggttacaatgccgttgcagagaccactaaaacctttatattgtggccttaattgcggt |
22602197 |
T |
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| Q |
211 |
agtggaccgtaatttagacctatgtgcatggaattcctatgacaaatgcttatatagtgatgtaacttttatttttat--gattgtaggagaatggttta |
308 |
Q |
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| T |
22602198 |
agtggaccgtaatttagaaccatgttcatgcaactcttatgacaaatacttatatagtaatgtaacttttattgttgtgggatttcaggagaatggttta |
22602297 |
T |
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| Q |
309 |
atgttgaccctgaagcagttataaatcaagcactgcagacaggagggggaccaaatgtttcagatgcatacacaataaatggccttccaggaccattcta |
408 |
Q |
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| T |
22602298 |
atgttgacccagaagcagttataaatcaagcattgcagacaggagggggaccaaatgtttcagatgcatacaccatcaatggccttccgggaccattcta |
22602397 |
T |
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| Q |
409 |
caattgttcctctaaaggtatgaaaacaag |
438 |
Q |
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| T |
22602398 |
caattgttcctctaaaggtatgaaaacaag |
22602427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 429
Target Start/End: Original strand, 21852421 - 21852494
Alignment:
| Q |
356 |
ggaccaaatgtttcagatgcatacacaataaatggccttccaggaccattctacaattgttcctctaaaggtat |
429 |
Q |
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| T |
21852421 |
ggaccaaatgtctctgatgcatatacaatcaatggacttccaggaccattgtataattgttctgctaaaggtat |
21852494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 2034971 - 2035010
Alignment:
| Q |
154 |
gttacaataccgttgtagagacctctaaaacctttatatt |
193 |
Q |
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| T |
2034971 |
gttacaataccgttgcagagacctctaaaacctttatatt |
2035010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 21204871 - 21204932
Alignment:
| Q |
356 |
ggaccaaatgtttcagatgcatacacaataaatggccttccaggaccattctacaattgttc |
417 |
Q |
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| T |
21204871 |
ggaccaaatgtctctgatgcatacacaattaatggacttccagggccattgtataattgttc |
21204932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 17204449 - 17204493
Alignment:
| Q |
165 |
gttgtagagacctctaaaacctttatattgtggccttaattgcgg |
209 |
Q |
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| T |
17204449 |
gttgtagagatctctaagacctttatattgtggcaataattgcgg |
17204493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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