View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_15 (Length: 448)
Name: NF19898_high_15
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 54014511 - 54014958
Alignment:
| Q |
1 |
gagagtgatagtttttgaaaagataatctccatgaaatttcttatgtacccaataataaagtggctctgaaactcccacatgtagaatcatggcaacaat |
100 |
Q |
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| T |
54014511 |
gagagtgatagtttttgaaaagataatctccatgaaatttcttatgtacccaataataaagtggctctgaaactcccacatgtagaatcatagcaacaat |
54014610 |
T |
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| Q |
101 |
aataccttttatattccatagaggaagatgctgaagaaatgggaaaatataggaaactaaggtagcaacgagtgtttgaagaatcaagaaattgtccctg |
200 |
Q |
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| T |
54014611 |
aataccttttacattccatagaggaagatgctgaagaaatgggaaaatataggaaactaaggtagcaacaagtgtttgaagaatcaagaaattgtccctg |
54014710 |
T |
|
| Q |
201 |
tttcaaaaaattatgatataaatcaataatcaacaaataattttcagcatatataatatactttgttaaatgataaaatgttgaattaccagtcccattc |
300 |
Q |
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| T |
54014711 |
tttcaaaaaattatgatataaatcaataatcaacaaataattttcagcatatataatatactttgttaaatgataaaatgttgaattaccagtcccattc |
54014810 |
T |
|
| Q |
301 |
tttgtcaatctgcttgaaatcaacaccttgttgaagaatccttcgatttctagtaagaaaaagcatgttactataagaactccaaaacacgtgtagtaga |
400 |
Q |
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| T |
54014811 |
tttgtcaatctgcttgaaatcaacaccttgttgaagaatccttcgatttctagtaagaaaaagcatgttactataagaactccaaaacacgtgtagtaga |
54014910 |
T |
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| Q |
401 |
gttcttagaccacatagtacgagcaaatgaatgcaccaccagctgagg |
448 |
Q |
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| T |
54014911 |
gttcttagaccacatagtacgagcaaatgaatgcaccaccagctgagg |
54014958 |
T |
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