View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_high_16 (Length: 442)

Name: NF19898_high_16
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_high_16
NF19898_high_16
[»] chr1 (7 HSPs)
chr1 (170-442)||(11820309-11820584)
chr1 (172-434)||(11804896-11805160)
chr1 (172-344)||(11818886-11819061)
chr1 (14-173)||(11820125-11820286)
chr1 (383-438)||(11819058-11819113)
chr1 (179-240)||(11827776-11827839)
chr1 (65-130)||(23407318-23407383)
[»] chr2 (2 HSPs)
chr2 (68-137)||(29849053-29849122)
chr2 (85-165)||(43725064-43725144)
[»] chr7 (2 HSPs)
chr7 (77-137)||(8638256-8638316)
chr7 (84-129)||(14202637-14202682)
[»] chr3 (1 HSPs)
chr3 (23-123)||(16723839-16723938)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 170 - 442
Target Start/End: Original strand, 11820309 - 11820584
Alignment:
Q  170 tgtgtgtgtgaagaagaatttcaaggggagaaaaata--gagacctggaaacaaggttgttgatgaatgaatcaggatggcctgatgagaaatctttaac 267  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11820309 tgtgtgtgtgaagaagaatttcaaggggagaaaaataaagagacctggaaacaaggtttttgatgaatgaatcaggatggcctgatgagaaatctttaac 11820408  T
Q  268 aaaggtcaacatattgccaataaatggccatcccatatgaccaggtggcaaaaggtattgattctttcttagtttcaaattatag-taccactcattcaa 366  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11820409 aaaggtcaacatattgccaataaatggccatcccatatgaccagatggcaaaaggtattgattctttcttagtttcaaattatagttaccactcattcaa 11820508  T
Q  367 tctccacacaaaaatgttcacacaaaaatagcttgcaaataaaatggcacacatccaaaaccaatattgtatatcc 442  Q
     |||||||||||||| || ||||||||||||||||| || |||||||||||||||| || |||| |||||||||||    
T  11820509 cctccacacaaaaatattaacacaaaaatagcttgccaacaaaatggcacacatccgaacccaaaattgtatatcc 11820584  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 172 - 434
Target Start/End: Original strand, 11804896 - 11805160
Alignment:
Q  172 tgtgtgtgaagaagaatttcaaggggagaaaaata--gagacctggaaacaaggttgttgatgaatgaatcaggatggcctgatgagaaatctttaacaa 269  Q
    |||||||||||| |||| | ||| | ||||||| |  ||||| |||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  11804896 tgtgtgtgaagatgaatgttaagtgaagaaaaagaaagagacttggaaacaaggttggtgatgaatgaatcaggatgaccagatgagaaatctttaacaa 11804995  T
Q  270 aggtcaacatattgccaataaatggccatcccatatgaccaggtggcaaaaggtattgattctttcttagtttcaaattatagtaccactcattcaatct 369  Q
    | |  ||||| |||||||| |  |||||||||| ||||||||| || | | ||||||| || ||| | ||||||| |||||| |||||||||||||||||    
T  11804996 aagctaacatgttgccaatgagaggccatcccaaatgaccaggaggtagagggtattgtttttttttgagtttcatattataataccactcattcaatct 11805095  T
Q  370 ccacacaaaaatgttcacacaaaaatagcttgcaaataaaatggcacacatccaaaaccaatatt 434  Q
    ||||| |||| || ||| ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  11805096 ccacataaaattgatcaaacaaaaatagcttgccaacaaaatggcacacatccaaacccaatatt 11805160  T

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Target: chr1; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 172 - 344
Target Start/End: Original strand, 11818886 - 11819061
Alignment:
Q  172 tgtgtgtgaagaagaatttcaaggggagaaaaata---gagacctggaaacaaggttgttgatgaatgaatcaggatggcctgatgagaaatctttaaca 268  Q
    ||||||| | |||||||| |||  |||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11818886 tgtgtgtaatgaagaattgcaatcggagaaaaataaaagagacttggaaacaaggttgttgatgaatgaatcaggatggcctgatgagaaatctttaaca 11818985  T
Q  269 aaggtcaacatattgccaataaatggccatcccatatgaccaggtggcaaaaggtattgattctttcttagtttca 344  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||| |||| | |||| || ||||||||||||||||    
T  11818986 aaggtcaacatatttccaataagtggccatcccaaatgaccaggaggcagagggtactgtttctttcttagtttca 11819061  T

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Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 11820125 - 11820286
Alignment:
Q  14 aatatgcatttgtcttgattcatccaattcatcaatttccatgaagttaaaggagaat--ttatgcgaactaattcgcaaaagtaccacaaactagtatg 111  Q
    |||||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||||  |||||| ||||||||| |||||||||||||||| |||| |    
T  11820125 aatatgcacttgtcttgattcgtccgattcatcaatttccatgaagttaaaggggaatatttatgccaactaattcacaaaagtaccacaaaccagtacg 11820224  T
Q  112 caagtaccaatttgcggttcacaacaatgttaagaaaatattgtgactatgatctaaatgtg 173  Q
    ||| |||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  11820225 caaataccaatttgcggttcacaacaatgttaagaaaattatgtgattatgatctaaatgtg 11820286  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 11819058 - 11819113
Alignment:
Q  383 ttcacacaaaaatagcttgcaaataaaatggcacacatccaaaaccaatattgtat 438  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  11819058 ttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtattgtat 11819113  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 11827776 - 11827839
Alignment:
Q  179 gaagaagaatttcaaggggagaaaaata--gagacctggaaacaaggttgttgatgaatgaatc 240  Q
    |||||||||||||||||||||||||| |  |||||||||||| |||||||||||||||||||||    
T  11827776 gaagaagaatttcaaggggagaaaaagaaagagacctggaaataaggttgttgatgaatgaatc 11827839  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 23407318 - 23407383
Alignment:
Q  65 ggagaatttatgcgaactaattcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggtt 130  Q
    ||||||| | || |||| |||||||||||||||||||||| || | ||||||| |||| |||||||    
T  23407318 ggagaatatgtgtgaacaaattcgcaaaagtaccacaaaccagaacgcaagtagcaatctgcggtt 23407383  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 29849053 - 29849122
Alignment:
Q  68 gaatttatgcgaactaattcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggttcacaaca 137  Q
    |||||| ||||||| |||||||||||||||||| |||| ||| ||||||||||||| || |||| |||||    
T  29849053 gaatttgtgcgaaccaattcgcaaaagtaccacgaactggtacgcaagtaccaattcgcagttcgcaaca 29849122  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 43725064 - 43725144
Alignment:
Q  85 ttcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggttcacaacaatgttaagaaaatattgtgactatgatc 165  Q
    ||||| ||||||||||||||| ||| ||||||| ||||||| | ||| ||||| | |||||| |||  |||||||||||||    
T  43725064 ttcgcgaaagtaccacaaactggtacgcaagtaacaatttgagattcgcaacattattaagagaattatgtgactatgatc 43725144  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 8638256 - 8638316
Alignment:
Q  77 cgaactaattcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggttcacaaca 137  Q
    ||||| ||||| ||||||||||||||||   || |||||||||||||||||||||||||||    
T  8638256 cgaaccaattcacaaaagtaccacaaacctatacgcaagtaccaatttgcggttcacaaca 8638316  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 14202637 - 14202682
Alignment:
Q  84 attcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggt 129  Q
    ||||| ||||||||||  |||||||||| |||||||||||||||||    
T  14202637 attcgtaaaagtaccatgaactagtatgtaagtaccaatttgcggt 14202682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 16723938 - 16723839
Alignment:
Q  23 ttgtcttgattcatccaattcatcaatttccatgaagttaaaggagaatttatgcgaactaattcgcaaaagtaccacaaactagtatgcaagtaccaat 122  Q
    |||||| |||| ||||| ||  ||||||||||||| |||| ||| |||||| ||||||| ||||| |||||||||||| |||  |||  |||||||||||    
T  16723938 ttgtctcgatttatccagtttgtcaatttccatga-gttacaggggaatttgtgcgaaccaattcacaaaagtaccacgaaccggtacacaagtaccaat 16723840  T

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