View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_18 (Length: 415)
Name: NF19898_high_18
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 12641942 - 12642242
Alignment:
| Q |
1 |
tcataaaacacttcatggatcataaacaaactaaccagcacacaaatcttaccattcccgtctcttttccaattcctccataaactccaccatcatacat |
100 |
Q |
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| T |
12641942 |
tcataaaacacttcatggatcataaacaaactaaccagcacacaaatcttaccattcccgtctcttttccaattcctccataaactccaccatcatacat |
12642041 |
T |
|
| Q |
101 |
tcaccctacagttaaatttcacaatacaccacaagacaaattcttaacctgtcaaaacagaaaat-aaaaataaccctgaccctggtgagctcaactcac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
12642042 |
tcaccctacagttaaatttcacaatacaccacaagacaaattcttaacctgtcaaaacagaaaataaaaaagaaccctgaccctggtgagctcaactcac |
12642141 |
T |
|
| Q |
200 |
ctaaactttaatcaaccaaaagcaaaaacatcacggcttctcctctttttccctattccattgctcaatcctcgctcgcctttcctcacttccttccctt |
299 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12642142 |
ctaaactttaatcaaccaaaagcaaaaacatcatggcttctcctctttttccctattccattgctcaatcctcgctcgcctttcctcacttccttccctt |
12642241 |
T |
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| Q |
300 |
g |
300 |
Q |
| |
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| T |
12642242 |
g |
12642242 |
T |
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