View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_2 (Length: 779)
Name: NF19898_high_2
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_2 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 702; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 10 - 779
Target Start/End: Complemental strand, 1350608 - 1349839
Alignment:
| Q |
10 |
ccaagaatatctattcaaataaaattgcctgagacttttaatatgatatatatgaatgaacataaattagcaatcaatatttatttattaattacaatat |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350608 |
ccaataatatctattcaaataaaattgcctgagacttttaatatgatatatatgaatgaacataaattagcaatcaatatttatttattaattacaatat |
1350509 |
T |
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| Q |
110 |
actaattgtgtcatatgatgtgctggactggactttacctaccatctatttacatgtttatccacacacatatatgtatgtaataatgagctgaaaatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350508 |
actaattgtgtcatatgatgtgctggactggactttacctaccatctatttacatgtttatccacacacatatatgtatgtaataatgagctgaaaatat |
1350409 |
T |
|
| Q |
210 |
atattttttctttcattcttccagaaaaccagtaggtctgagaagacattttggtacttactaaactgattaactatgtagcattgagatgtgtttggtg |
309 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |
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| T |
1350408 |
atattttttctttcattcttctagaaaaccagtaggtctgagaagacattttggtacttactacactgattaactatgtagcactgagacgtgtttggtg |
1350309 |
T |
|
| Q |
310 |
tccgacattgacatatgtggttacattcaaatatttcacattttctaattttatcaatgtcaaatgtgtcaatatcaatgtcgtatccatattttgttgt |
409 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1350308 |
tccgacattgacatatttggttacattcaaatatttcacattttctaattttatcaatgtcaaatgtgtcaatatcaatttcgtatccatattttgttgt |
1350209 |
T |
|
| Q |
410 |
cggtcgtaattagttaaggcaccacagtttgtttgccttcaatcttgactccaacaattctcttccnnnnnnnntgttctctccaaaccctatccatttg |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1350208 |
cggtcgtaattagttaaggcaccacagtttgtttgccttcaatcttgtctccaacaattctcttccaaaaaaaatgttctctccaaaccctatccatttg |
1350109 |
T |
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| Q |
510 |
ctcaattggaacattcttggtttctggtaacagaaaataaacaaacactgtcatcataaccacccaacctccaaaaaagaagaaagttccatacttaaaa |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1350108 |
ctcaattggaacattcttggtttctggtaacagaaaataaacaaacactgtcataataaccacccaacctccaaaaaagaagaaagttccatacttgaaa |
1350009 |
T |
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| Q |
610 |
tgacacagcatgctaagaaaagtttgagcaacaatgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaa |
709 |
Q |
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| T |
1350008 |
tgacacagcatgctaagaaaagtttgagcaacaatgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaa |
1349909 |
T |
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| Q |
710 |
aaatctcactaggaaccaaccatcctaatggcccccatgaccaagcaaatccggcgacataaatgcatat |
779 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1349908 |
aaatctcactaggaaccaaccatcctaatggcccccatgaccaagcgaatccggcgacataaatgcatat |
1349839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 545 - 779
Target Start/End: Complemental strand, 1357030 - 1356796
Alignment:
| Q |
545 |
aataaacaaacactgtcatcataaccacccaacctccaaaaaagaagaaagttccatacttaaaatgacacagcatgctaagaaaagtttgagcaacaat |
644 |
Q |
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|||| |||||||| ||||||| ||||||||||||||||| ||||||||| | ||| |||| || || || |||||| ||||| || ||||||||||| |
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| T |
1357030 |
aatacacaaacacagtcatcaccaccacccaacctccaaagaagaagaaaatcccagacttgaagtggcaaagcatggatagaaatgtctgagcaacaat |
1356931 |
T |
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| Q |
645 |
gaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggcccc |
744 |
Q |
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| T |
1356930 |
aaaagtgaagagaaaactcactgctactgtgatgctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccc |
1356831 |
T |
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| Q |
745 |
catgaccaagcaaatccggcgacataaatgcatat |
779 |
Q |
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| T |
1356830 |
cacgaccatccaaacccagcaacataaatacatat |
1356796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 696 - 776
Target Start/End: Complemental strand, 36202764 - 36202684
Alignment:
| Q |
696 |
aatctccaacggaaaaatctcactaggaaccaaccatcctaatggcccccatgaccaagcaaatccggcgacataaatgca |
776 |
Q |
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| T |
36202764 |
aatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaatcctgctacgtaaatgca |
36202684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 752
Target Start/End: Complemental strand, 48332905 - 48332796
Alignment:
| Q |
643 |
atgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggcc |
742 |
Q |
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|||||||| || |||| |||||| |||||||| ||||||||| | || |||| || || |||||||| |||||||| || || |||||||| ||||| |
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| T |
48332905 |
atgaaagtgaagagaaggttcacagcaactgttatactttgccctgccgatcggatttctaacggaaatatctcacttgggactgtccatcctagtggcc |
48332806 |
T |
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| Q |
743 |
cccatgacca |
752 |
Q |
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|||||||||| |
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| T |
48332805 |
cccatgacca |
48332796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 752
Target Start/End: Complemental strand, 48345501 - 48345391
Alignment:
| Q |
642 |
aatgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggc |
741 |
Q |
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||||||||| ||||||| ||| ||||||||||| ||||||||| | || |||| || || || ||||| |||||||| || || |||||| | |||| |
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| T |
48345501 |
aatgaaagtgaacagaaggtttactgcaactgtgatactttgccctgccgatcggatttctaatggaaatatctcacttgggactgtccatccaagtggc |
48345402 |
T |
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| Q |
742 |
ccccatgacca |
752 |
Q |
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| T |
48345401 |
ccccatgacca |
48345391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 752
Target Start/End: Complemental strand, 20427 - 20318
Alignment:
| Q |
643 |
atgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggcc |
742 |
Q |
| |
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|||||||| || |||| |||||| |||||||| ||||||||| | || |||| || || |||||||| |||||||| || || |||||||| ||||| |
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| T |
20427 |
atgaaagtgaagagaaggttcacagcaactgttatactttgccctgccgatcggatttctaacggaaatatctcacttgggactgtccatcctagtggcc |
20328 |
T |
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| Q |
743 |
cccatgacca |
752 |
Q |
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|||||||||| |
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| T |
20327 |
cccatgacca |
20318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 749
Target Start/End: Complemental strand, 43380894 - 43380823
Alignment:
| Q |
678 |
actttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggcccccatga |
749 |
Q |
| |
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|||||| || ||||| || ||||| || ||||||| |||||| ||||||||||||||||| || |||||||| |
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| T |
43380894 |
actttgtgcagctgaccttatctctaatggaaaaagctcacttggaaccaaccatcctaagggtccccatga |
43380823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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