View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_high_21 (Length: 387)

Name: NF19898_high_21
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_high_21
NF19898_high_21
[»] chr1 (6 HSPs)
chr1 (20-164)||(30498722-30498866)
chr1 (229-319)||(30498931-30499021)
chr1 (18-127)||(30419653-30419764)
chr1 (97-133)||(19070101-19070137)
chr1 (97-133)||(19117991-19118027)
chr1 (18-133)||(24040134-24040248)
[»] chr7 (6 HSPs)
chr7 (18-133)||(11882426-11882543)
chr7 (18-127)||(28754254-28754366)
chr7 (98-133)||(8064882-8064917)
chr7 (33-132)||(7360115-7360216)
chr7 (21-115)||(22377851-22377947)
chr7 (97-133)||(41396410-41396446)
[»] chr8 (2 HSPs)
chr8 (13-133)||(18019618-18019740)
chr8 (34-133)||(15037324-15037425)
[»] chr2 (6 HSPs)
chr2 (21-118)||(42796506-42796605)
chr2 (18-133)||(8757757-8757874)
chr2 (18-121)||(32036420-32036525)
chr2 (18-120)||(22165936-22166039)
chr2 (18-128)||(25528647-25528759)
chr2 (39-120)||(14739708-14739791)
[»] chr4 (1 HSPs)
chr4 (18-133)||(856527-856644)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 30498722 - 30498866
Alignment:
Q  20 gtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagaccggtgaatggatcaaccgtcaac 119  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  30498722 gtctacctaaataggtaatatgaaaatgaaaaacaacacaaatggatcaaaacaacctattaaatagaggtttagaccggtgaatagatcgaccgtcaac 30498821  T
Q  120 acagagcaaatccatgcagggttgtaaactttagcaaaaactcta 164  Q
    |   |||| ||||||| ||||||||||||||||||||||||||||    
T  30498822 atgaagcagatccatgtagggttgtaaactttagcaaaaactcta 30498866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 30498931 - 30499021
Alignment:
Q  229 attagataagcacataactatgatgagttaataaatatttcttctgtcttgaaattatggaaaacaatcgaaggataaactttccataatc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30498931 attagataagcacataactatgatgagttaataaatatttcttctgtcatgaaattatggaaaacaatcgaaggataaactttccataatc 30499021  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 30419653 - 30419764
Alignment:
Q  18 aggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagac--cggtgaatggatcaaccgt 115  Q
    ||||||||| |||| |||||||||||||| |||||||||| | || ||| | |||| ||| |||| |||| ||||| ||  ||||| |||||||||||||    
T  30419653 aggtctacctaaatgggtaatatgaaaattaaaaacaacagagatggattataacagcctcttaagtagaagtttaaaccgcggtgcatggatcaaccgt 30419752  T
Q  116 caacacagagca 127  Q
    |||||| |||||    
T  30419753 caacacggagca 30419764  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 19070101 - 19070137
Alignment:
Q  97 cggtgaatggatcaaccgtcaacacagagcaaatcca 133  Q
    ||||||||||||||||||||||||| |||||||||||    
T  19070101 cggtgaatggatcaaccgtcaacacggagcaaatcca 19070137  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 19117991 - 19118027
Alignment:
Q  97 cggtgaatggatcaaccgtcaacacagagcaaatcca 133  Q
    ||||||||||||||||||||||||| |||||||||||    
T  19117991 cggtgaatggatcaaccgtcaacacggagcaaatcca 19118027  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 24040248 - 24040134
Alignment:
Q  18 aggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagac--cggtgaatggatcaaccgt 115  Q
    ||||||||| |||  ||||| || |||||  ||||||||| |||| |||||||||||||| ||   ||||||| |||||   |||||||||| ||||| |    
T  24040248 aggtctacccaaacgggtaacataaaaatttaaaacaacacaaatggatcaaaacaacctctt---tagaggtctagactggggtgaatggaccaaccat 24040152  T
Q  116 caacacagagcaaatcca 133  Q
    |||||| ||||| |||||    
T  24040151 caacacggagcagatcca 24040134  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 11882543 - 11882426
Alignment:
Q  18 aggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagacc--ggtgaatggatcaaccgt 115  Q
    |||||||||  |||||||||||||||||| |||| ||||| |||| ||| | |||||||| |||| ||||||| ||||||  |||||||||| |||||||    
T  11882543 aggtctaccttaataggtaatatgaaaattaaaagcaacacaaatagattataacaacctcttaagtagaggtctagaccgtggtgaatggaccaaccgt 11882444  T
Q  116 caacacagagcaaatcca 133  Q
    |||||| ||||| |||||    
T  11882443 caacacggagcagatcca 11882426  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 28754254 - 28754366
Alignment:
Q  18 aggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagac--cgg-tgaatggatcaaccg 114  Q
    ||||||||| |||  |||||||||||||| |||||||||| || | ||| | |||| ||| |||| ||||||| |||||  ||| |||||||| ||||||    
T  28754254 aggtctacccaaacgggtaatatgaaaattaaaaacaacacaagtggattataacatcctcttaagtagaggtctagactgcggttgaatggaccaaccg 28754353  T
Q  115 tcaacacagagca 127  Q
    |||||||||||||    
T  28754354 tcaacacagagca 28754366  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 8064882 - 8064917
Alignment:
Q  98 ggtgaatggatcaaccgtcaacacagagcaaatcca 133  Q
    ||||||||||||||||||||||||||||||||||||    
T  8064882 ggtgaatggatcaaccgtcaacacagagcaaatcca 8064917  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 7360115 - 7360216
Alignment:
Q  33 ggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagac--cggtgaatggatcaaccgtcaacacagagcaaat 130  Q
    |||||||||||||| |||||||||| || | ||| | |||| ||| |||| ||||||| |||||  || |||||||| ||| ||||||||||||||| ||    
T  7360115 ggtaatatgaaaattaaaaacaacacaagtggattataacagcctcttaagtagaggtctagaccgcgatgaatggaccaatcgtcaacacagagcagat 7360214  T
Q  131 cc 132  Q
    ||    
T  7360215 cc 7360216  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 22377947 - 22377851
Alignment:
Q  21 tctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagac--cggtgaatggatcaaccgt 115  Q
    ||||||||||  |||||||||||||| |||||||||| || | ||| | |||| ||| |||| ||||||| |||||  ||||||||||| |||||||    
T  22377947 tctaccgaaactggtaatatgaaaattaaaaacaacacaagtggattataacatcctcttaagtagaggtctagactgcggtgaatggaccaaccgt 22377851  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 41396410 - 41396446
Alignment:
Q  97 cggtgaatggatcaaccgtcaacacagagcaaatcca 133  Q
    ||||||||||||||||||||||||| |||||||||||    
T  41396410 cggtgaatggatcaaccgtcaacacggagcaaatcca 41396446  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 18019618 - 18019740
Alignment:
Q  13 tatgcaggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttaga--ccggtgaatggatca 110  Q
    |||| ||||||||| |||  |||||||||||||| |||||||||| |||| ||| | |||  ||| |||||||||||| || |  |||||||||||||||    
T  18019618 tatggaggtctacccaaacgggtaatatgaaaattaaaaacaacacaaatagattataacggcctcttaaatagaggtctaaatcccggtgaatggatca 18019717  T
Q  111 accgtcaacacagagcaaatcca 133  Q
    ||||||||||| ||||| |||||    
T  18019718 accgtcaacacggagcatatcca 18019740  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 15037425 - 15037324
Alignment:
Q  34 gtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagac--cggtgaatggatcaaccgtcaacacagagcaaatc 131  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||| |||| ||||||| |||||  ||||||| ||| ||| ||| ||||| ||||| |||    
T  15037425 gtaatatgaaaattaaaaacaacacaaattgatcaaaacagcctcttaagtagaggtctagaccacggtgaacggaccaatcgtaaacacggagcagatc 15037326  T
Q  132 ca 133  Q
    ||    
T  15037325 ca 15037324  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 42796506 - 42796605
Alignment:
Q  21 tctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagacc--ggtgaatggatcaaccgtcaa 118  Q
    |||||| ||| ||||||||||||||| |||||||||| |||| |||||||||| ||| |||| ||||||| |||| |  |||||||||| ||||||||||    
T  42796506 tctacccaaacaggtaatatgaaaattaaaaacaacacaaatggatcaaaacagcctcttaagtagaggtctagatcgtggtgaatggaccaaccgtcaa 42796605  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 8757874 - 8757757
Alignment:
Q  18 aggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagaccg--gtgaatggatcaaccgt 115  Q
    ||||||||| |||  |||||||||||||| |||||||||| || | ||| |||||| ||| ||||||| | || |||||||  ||||||||| |||||||    
T  8757874 aggtctacccaaacgggtaatatgaaaattaaaaacaacacaagtggattaaaacatcctcttaaataaatgtctagaccgcagtgaatggaccaaccgt 8757775  T
Q  116 caacacagagcaaatcca 133  Q
    |||||| ||||| |||||    
T  8757774 caacacggagcagatcca 8757757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 32036525 - 32036420
Alignment:
Q  18 aggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagac--cggtgaatggatcaaccgt 115  Q
    ||||||||| |||  |||||||||||||| |||||||||| |||| ||||| |||||||| |||| |||||||  | ||  ||||||||||| |||||||    
T  32036525 aggtctacccaaacgggtaatatgaaaattaaaaacaacacaaatggatcataacaacctcttaagtagaggtcgaaactgcggtgaatggaccaaccgt 32036426  T
Q  116 caacac 121  Q
    ||||||    
T  32036425 caacac 32036420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 22166039 - 22165936
Alignment:
Q  18 aggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagac--cggtgaatggatcaaccgt 115  Q
    ||||||||| |||  ||| |||||||||| ||||||||||||||| ||| | |||| ||| |||  || ||| ||||||  |||||||||||||||||||    
T  22166039 aggtctacccaaacgggtgatatgaaaattaaaaacaacataaatggattataacagccttttacgtaaagg-ttagaccacggtgaatggatcaaccgt 22165941  T
Q  116 caaca 120  Q
    |||||    
T  22165940 caaca 22165936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 25528759 - 25528647
Alignment:
Q  18 aggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagaccg--gtgaatggatcaaccgt 115  Q
    ||||||||| |||  |||||||||||||| |||||||||| || | ||| | || | ||| | || ||||||| |||||||  ||||||||| |||||||    
T  25528759 aggtctacccaaacgggtaatatgaaaattaaaaacaacacaagtggataataatagcctctaaagtagaggtctagaccgcggtgaatggaccaaccgt 25528660  T
Q  116 caacacagagcaa 128  Q
    |||||| ||||||    
T  25528659 caacacggagcaa 25528647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 14739791 - 14739708
Alignment:
Q  39 atgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagaccg--gtgaatggatcaaccgtcaaca 120  Q
    |||||||| |||||||||| |||| ||| | |||||||| ||||| |||||| || | ||  ||||||||||||||||||||||    
T  14739791 atgaaaattaaaaacaacacaaatggattataacaacctcttaaacagaggtctaaatcgcggtgaatggatcaaccgtcaaca 14739708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 856644 - 856527
Alignment:
Q  18 aggtctaccgaaataggtaatatgaaaatgaaaaacaacataaattgatcaaaacaacctattaaatagaggtttagaccg--gtgaatggatcaaccgt 115  Q
    ||||||||| ||| ||||||||| ||||| |||||||| | |||| ||| |||||| ||| |||| |||| || |||||||  |||||||||||||| ||    
T  856644 aggtctacccaaacaggtaatatcaaaattaaaaacaatacaaatagattaaaacagcctcttaagtagatgtctagaccgcggtgaatggatcaactgt 856545  T
Q  116 caacacagagcaaatcca 133  Q
    |||||| ||||| |||||    
T  856544 caacacggagcagatcca 856527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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