View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_22 (Length: 379)
Name: NF19898_high_22
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 39549036 - 39548891
Alignment:
| Q |
13 |
aatattatattgtttgatgtttgtgcatggagggcattgttagattgttaggcatatttgccgatgactttggtgctaaaattaattgtcgtgtcatcac |
112 |
Q |
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| T |
39549036 |
aatattatattgtttgatgtttgtgcatggagggcattgttagattgttaggcatatttgccgatgactttggtgctaaaattaattgtcttgtcatcat |
39548937 |
T |
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| Q |
113 |
agaaaaagatgatgatatttgtttggaataaaaatacaagataggt |
158 |
Q |
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| T |
39548936 |
agaaaaagatgatgatatttgtttggaataaaaatacaagataggt |
39548891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 209 - 369
Target Start/End: Complemental strand, 39548706 - 39548546
Alignment:
| Q |
209 |
tcaattgtcctacttttgatcctccaatgatatttatcattaaaaaatatgatgatatttgagatgttcatctatttatatatctctttgtaaattagaa |
308 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39548706 |
tcaattgtcctacttttgatcctccagtgatatttatcattaaaaaatatgataaaatttgagatgttcatccatttatatatctctttgtaaattagaa |
39548607 |
T |
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| Q |
309 |
ttgtgcctacgtgacacctttagaaaagcttaatttctcctatcttattttgtccaaaaat |
369 |
Q |
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| T |
39548606 |
ttgtccatacgtgacacctttagaaaaccttaatttctcctatcttattttatccaaaaat |
39548546 |
T |
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