View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_high_23 (Length: 371)

Name: NF19898_high_23
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_high_23
NF19898_high_23
[»] chr1 (11 HSPs)
chr1 (1-371)||(12641584-12641954)
chr1 (109-195)||(28077073-28077159)
chr1 (136-195)||(25479588-25479647)
chr1 (132-186)||(4700079-4700133)
chr1 (148-205)||(15361059-15361116)
chr1 (154-212)||(10199395-10199453)
chr1 (159-197)||(11129338-11129376)
chr1 (135-209)||(27140484-27140558)
chr1 (120-199)||(33975559-33975640)
chr1 (135-215)||(10744307-10744387)
chr1 (143-195)||(46252686-46252738)
[»] chr8 (7 HSPs)
chr8 (109-195)||(20672730-20672816)
chr8 (143-195)||(2458570-2458622)
chr8 (135-195)||(30389105-30389165)
chr8 (135-189)||(11745662-11745716)
chr8 (149-211)||(41606891-41606953)
chr8 (162-195)||(4281579-4281612)
chr8 (167-211)||(779049-779093)
[»] chr4 (9 HSPs)
chr4 (143-212)||(1137726-1137795)
chr4 (136-212)||(20936216-20936292)
chr4 (136-195)||(39063651-39063710)
chr4 (83-173)||(51044506-51044593)
chr4 (131-199)||(25309243-25309312)
chr4 (136-209)||(29263377-29263450)
chr4 (132-197)||(53673660-53673725)
chr4 (160-212)||(679749-679801)
chr4 (160-196)||(47145993-47146029)
[»] chr7 (5 HSPs)
chr7 (135-191)||(27378836-27378892)
chr7 (130-191)||(7244681-7244742)
chr7 (135-199)||(4966162-4966226)
chr7 (135-195)||(38010720-38010780)
chr7 (160-212)||(43250686-43250738)
[»] chr5 (6 HSPs)
chr5 (129-212)||(37611202-37611285)
chr5 (129-212)||(37787932-37788015)
chr5 (135-209)||(41957441-41957515)
chr5 (148-209)||(8177522-8177583)
chr5 (108-209)||(13605363-13605463)
chr5 (135-212)||(17258870-17258947)
[»] chr6 (3 HSPs)
chr6 (136-209)||(2112207-2112280)
chr6 (135-195)||(6647393-6647453)
chr6 (132-212)||(33887833-33887913)
[»] chr2 (9 HSPs)
chr2 (135-195)||(10198484-10198544)
chr2 (136-195)||(12147464-12147523)
chr2 (136-194)||(35379021-35379079)
chr2 (138-212)||(41817177-41817251)
chr2 (150-212)||(43529845-43529907)
chr2 (160-216)||(1056112-1056168)
chr2 (132-212)||(8017437-8017517)
chr2 (132-212)||(9556242-9556322)
chr2 (135-195)||(22681189-22681249)
[»] chr3 (6 HSPs)
chr3 (143-210)||(24785275-24785342)
chr3 (135-209)||(1217790-1217864)
chr3 (160-209)||(42745069-42745118)
chr3 (160-193)||(47513684-47513717)
chr3 (118-190)||(16790387-16790459)
chr3 (143-195)||(33883754-33883806)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 12641584 - 12641954
Alignment:
Q  1 gaatgtagtccaccgcaccagaaaacaactaattatcttccattcatgattggaatactagaaaagctagctaactactaaatgtttatgaataagctat 100  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12641584 gaatgtagtccaccacaccagaaaacaactaattatcctccattcatgattggaatactagaaaagctagctaactactaaatgtttatgaataagctat 12641683  T
Q  101 ttctatccataaccaatgataaaataacatcaaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  12641684 ttctatccataaccaatgataaaataacatcaaactgtttttataatctatcctagagtgcttatgaaaataagatgaaaacaacttacgaacatatcac 12641783  T
Q  201 aagatgttttcacaaacaagtatttgtactaatttggctaataagcttaaataagtcatttcaaacataccctaattatcaaacaatgaacacattaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12641784 aagatgttttcacaaacaagtatttgtactaatttggctaataagcttaaataagtcatttcaaacataccctaattatcaaacaatgaacacattaaac 12641883  T
Q  301 aaaatagaaacataacaaaactccaactttaattaaggttctcaaccaatatcttaattcataaaacactt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12641884 aaaatagaaacataacaaaactccaactttaattaaggttctccaccaatatcttaattcataaaacactt 12641954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 28077159 - 28077073
Alignment:
Q  109 ataaccaatgataaaataacatcaaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    |||||||| ||||||| || ||||||||||||| |||| ||||  ||||| ||||||  ||||||  ||||||||||||||||||||    
T  28077159 ataaccaaagataaaagaaaatcaaactgttttcataagctattttagagagcttattgaaataagctgaaaacaacttatgaacat 28077073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 25479588 - 25479647
Alignment:
Q  136 tgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    |||||| |||| ||||||||||| ||||||||||||||  ||||||||||| ||||||||    
T  25479588 tgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacat 25479647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 4700133 - 4700079
Alignment:
Q  132 aaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaact 186  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||  |||||||||||    
T  4700133 aaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 15361059 - 15361116
Alignment:
Q  148 ctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagat 205  Q
    ||||||| ||| ||||||||||||||  ||||||||||||||||||||| || |||||    
T  15361059 ctatcctggagagcttatgaaaataagctgaaaacaacttatgaacatagcataagat 15361116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 10199453 - 10199395
Alignment:
Q  154 tagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    ||||| ||||||||||||||  |||||||||||||||||||| ||| ||| | ||||||    
T  10199453 tagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttca 10199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 11129338 - 11129376
Alignment:
Q  159 tgcttatgaaaataaaatgaaaacaacttatgaacatat 197  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  11129338 tgcttatgaaaataaactgaaaacaacttatgtacatat 11129376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 27140484 - 27140558
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttt 209  Q
    |||||||||||| ||||| | ||| ||||||| ||||||  ||||||||||||||| |||| ||| ||| |||||    
T  27140484 ctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgttt 27140558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 33975559 - 33975640
Alignment:
Q  120 taaaataacatcaaactgtttt--tataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatca 199  Q
    |||||||| |||||||||||||  ||| | ||||||||||| ||||||||||||||  |||||| |  ||||| ||||||||    
T  33975559 taaaataaaatcaaactgttttcgtatgaactatcctagagagcttatgaaaataagctgaaaatagtttatggacatatca 33975640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 10744307 - 10744387
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttcacaa 215  Q
    ||||||| |||| || || |||||  ||||| ||||||| ||||||||| |||||||||||  || ||| |||||||||||    
T  10744307 ctgttttcataagctgtcttagagaacttataaaaataagatgaaaacagcttatgaacatgccataagctgttttcacaa 10744387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 46252738 - 46252686
Alignment:
Q  143 ataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    |||| ||||| | ||| ||||||||||||||  ||||||||||||||||||||    
T  46252738 ataagctatcttggagagcttatgaaaataacctgaaaacaacttatgaacat 46252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 20672730 - 20672816
Alignment:
Q  109 ataaccaatgataaaataacatcaaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    ||||| || ||||||||||  ||||||||||||||||| ||||||| ||| ||||||||||||||  |||||||| |||||||||||    
T  20672730 ataacaaaagataaaataaagtcaaactgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacat 20672816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 2458622 - 2458570
Alignment:
Q  143 ataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    |||| ||||||||||| ||||||| ||||||| |||||||| |||||||||||    
T  2458622 ataagctatcctagagagcttatggaaataaactgaaaacagcttatgaacat 2458570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 30389105 - 30389165
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    ||||||| |||| || ||||||||  |||||||||||||  ||||||||||||||||||||    
T  30389105 ctgttttcataagctttcctagagaacttatgaaaataagctgaaaacaacttatgaacat 30389165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 11745716 - 11745662
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttat 189  Q
    |||||||||||| ||||||||| | |||||||||| |||  ||||||||||||||    
T  11745716 ctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaacttat 11745662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 41606953 - 41606891
Alignment:
Q  149 tatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttc 211  Q
    |||||||||| ||||||| ||||||  |||||||||||| ||||||| ||| ||| |||||||    
T  41606953 tatcctagagagcttatggaaataagctgaaaacaacttttgaacatgtcataagctgttttc 41606891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 4281579 - 4281612
Alignment:
Q  162 ttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    |||||||||||| |||||||||||||||||||||    
T  4281579 ttatgaaaataagatgaaaacaacttatgaacat 4281612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 779093 - 779049
Alignment:
Q  167 aaaataaaatgaaaacaacttatgaacatatcacaagatgttttc 211  Q
    ||||||| ||||||||||||||||||||| ||| ||| |||||||    
T  779093 aaaataagatgaaaacaacttatgaacatgtcataagttgttttc 779049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 1137726 - 1137795
Alignment:
Q  143 ataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    |||| |||||| |||| ||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||    
T  1137726 ataaactatccaagagagcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttca 1137795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 20936292 - 20936216
Alignment:
Q  136 tgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    |||||| ||| |||||||| ||| | ||||| ||||||  |||||||| ||||||||||||||| ||| ||||||||    
T  20936292 tgttttcatattctatcctggagagattatggaaataaggtgaaaacagcttatgaacatatcataagttgttttca 20936216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 39063710 - 39063651
Alignment:
Q  136 tgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    ||||||||||| ||||||| ||| ||||||||||||||| ||||||| | |||| |||||    
T  39063710 tgtttttataagctatcctggagagcttatgaaaataaactgaaaaccaattataaacat 39063651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 51044593 - 51044506
Alignment:
Q  83 tgtttatgaataagctatttctatccataaccaatgataaaataacatcaaact-gtttttataatctatcctagagtgcttatgaaaataa 173  Q
    |||||||| |||||||||||||||    ||| || ||||||||||  ||||||| ||||| |||| |||||||||||  |||||||||||||    
T  51044593 tgtttatgtataagctatttctat----aacaaaagataaaataaagtcaaacttgttttcataagctatcctagagaacttatgaaaataa 51044506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 25309243 - 25309312
Alignment:
Q  131 caaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaa-caacttatgaacatatca 199  Q
    |||||||||||  ||| |||||||  || ||||||||||||||  |||||| ||||||||||||||||||    
T  25309243 caaactgttttcgtaaactatcctgcagagcttatgaaaataaggtgaaaaacaacttatgaacatatca 25309312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 29263377 - 29263450
Alignment:
Q  136 tgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttt 209  Q
    |||||| |||| |||||||  || |||| || ||||||  |||||||||||||||||||||||| ||| |||||    
T  29263377 tgttttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttatgaacatatcataagctgttt 29263450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 53673725 - 53673660
Alignment:
Q  132 aaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatat 197  Q
    |||||||||| |||| ||||| | ||| ||||||| ||||||  ||||||||||||||| ||||||    
T  53673725 aaactgttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatggacatat 53673660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 679749 - 679801
Alignment:
Q  160 gcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    |||||||||||||   ||||||||  |||||||||||||| ||||||||||||    
T  679749 gcttatgaaaatatgctgaaaacagtttatgaacatatcataagatgttttca 679801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 47145993 - 47146029
Alignment:
Q  160 gcttatgaaaataaaatgaaaacaacttatgaacata 196  Q
    ||||||||||||||  |||||||||||||||||||||    
T  47145993 gcttatgaaaataaggtgaaaacaacttatgaacata 47146029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 27378892 - 27378836
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatga 191  Q
    ||||||| |||| ||||||| ||| ||||||||||||||| ||||||||||||||||    
T  27378892 ctgttttcataaactatcctggagagcttatgaaaataaactgaaaacaacttatga 27378836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 7244681 - 7244742
Alignment:
Q  130 tcaaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatga 191  Q
    |||||||||||| |||| ||||  | ||| ||||||||||||||  ||||||||||||||||    
T  7244681 tcaaactgttttcataagctatattggagagcttatgaaaataagctgaaaacaacttatga 7244742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 4966162 - 4966226
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatca 199  Q
    ||||||| |||| | |||||  || ||||||| ||||||| ||||||||||||||| ||||||||    
T  4966162 ctgttttcataagccatcctgaagagcttatggaaataaactgaaaacaacttatggacatatca 4966226  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 38010720 - 38010780
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    ||||||| ||||||||||||||||  |||||| ||||||  | |||||| |||||||||||    
T  38010720 ctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacat 38010780  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 43250738 - 43250686
Alignment:
Q  160 gcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    ||||||||| ||||| ||||||||||||| |||||| ||| ||| ||||||||    
T  43250738 gcttatgaatataaactgaaaacaacttacgaacatgtcataagctgttttca 43250686  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 37611285 - 37611202
Alignment:
Q  129 atcaaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    |||||| |||||| |||| ||||| | ||| ||||||| ||||||  |||||||| ||||||||||| ||||||| ||||||||    
T  37611285 atcaaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttca 37611202  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 37788015 - 37787932
Alignment:
Q  129 atcaaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    |||||| |||||| |||| ||||| | ||| ||||||| ||||||  |||||||| ||||||||||| ||||||| ||||||||    
T  37788015 atcaaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttca 37787932  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 41957515 - 41957441
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttt 209  Q
    ||||||| |||| ||||||| |||  ||||||||||||| |||||||||||||||| |||| ||| ||| |||||    
T  41957515 ctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgttt 41957441  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 8177583 - 8177522
Alignment:
Q  148 ctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttt 209  Q
    ||||||| ||| ||||||||||||||  ||||||||||||||| |||||||| ||| |||||    
T  8177583 ctatcctggagagcttatgaaaataacctgaaaacaacttatggacatatcataagctgttt 8177522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 13605463 - 13605363
Alignment:
Q  108 cataaccaatgataaaataacatcaaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgt 207  Q
    |||||| || ||||||||||  |||| || ||| ||||| ||||||| ||  ||||||||||||||| ||||||||| ||||| |||| ||| ||| |||    
T  13605463 cataacaaaagataaaataaagtcaatct-tttatataagctatcctggaaagcttatgaaaataaactgaaaacaatttatgtacatttcataagctgt 13605365  T
Q  208 tt 209  Q
    ||    
T  13605364 tt 13605363  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 17258947 - 17258870
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    ||||||| |||| |||||||  || ||||||||||||||  |||||||| ||||||||||| ||| ||| | ||||||    
T  17258947 ctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttca 17258870  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 2112207 - 2112280
Alignment:
Q  136 tgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttt 209  Q
    |||||| |||| ||||| ||||||||||||  |||||||  ||||||||||||||||||| ||| ||| |||||    
T  2112207 tgttttcataaactatcttagagtgcttatagaaataaaccgaaaacaacttatgaacatgtcataagttgttt 2112280  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 6647393 - 6647453
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    ||||||| |||| ||||| ||||| ||||||||||||||  |||||||| |||||||||||    
T  6647393 ctgttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacat 6647453  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 33887833 - 33887913
Alignment:
Q  132 aaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    |||||||||| |||| |||||||  | |||||||| ||||||  |||||||||||| ||||||| ||| ||| | ||||||    
T  33887833 aaactgttttcataagctatcctgaaatgcttatggaaataagttgaaaacaacttgtgaacatgtcataagctattttca 33887913  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 10198544 - 10198484
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    |||||||||||||||||||||||| | ||||| ||||||  ||| |||| |||||||||||    
T  10198544 ctgtttttataatctatcctagagagattatggaaataagctgacaacagcttatgaacat 10198484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 12147464 - 12147523
Alignment:
Q  136 tgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    ||||||||||| |||| || ||  ||||||||||||||| ||||||||| ||||||||||    
T  12147464 tgtttttataaactattctggatagcttatgaaaataaactgaaaacaatttatgaacat 12147523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 35379079 - 35379021
Alignment:
Q  136 tgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaaca 194  Q
    |||||| |||| ||||| | ||| ||||||||||||||  |||||||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaaca 35379021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 41817177 - 41817251
Alignment:
Q  138 tttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    |||| |||| ||||||| ||| ||||||| ||||||  ||||||||| |||| ||||| ||| ||||||||||||    
T  41817177 ttttcataaactatcctggagagcttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttca 41817251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 43529907 - 43529845
Alignment:
Q  150 atcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    ||||||||| ||||||||||||||| |||||| | |||||||||||  || ||| ||||||||    
T  43529907 atcctagagagcttatgaaaataaactgaaaatagcttatgaacatggcataagctgttttca 43529845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 1056168 - 1056112
Alignment:
Q  160 gcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttcacaaa 216  Q
    ||||||||||| ||  ||||||||||| |||||||| ||| ||| ||||||||||||    
T  1056168 gcttatgaaaacaagctgaaaacaactaatgaacatgtcataagttgttttcacaaa 1056112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 8017437 - 8017517
Alignment:
Q  132 aaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    |||||||||| |||| ||||| | |||  ||||||||||||    |||||||| |||||||||||||| ||| ||||||||    
T  8017437 aaactgttttcataagctatcttggagaacttatgaaaatacgcagaaaacaaattatgaacatatcataagctgttttca 8017517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 9556242 - 9556322
Alignment:
Q  132 aaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttttca 212  Q
    |||||||||| |||| ||||||||||  ||||||||||||||  ||||| | ||||||| |||| |||  || ||||||||    
T  9556242 aaactgttttcataagctatcctagaaagcttatgaaaataagttgaaatctacttatggacatgtcattagttgttttca 9556322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 22681249 - 22681189
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    ||||||| ||||||||||||||||  |||||| ||||||  | |||||| |||||||||||    
T  22681249 ctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacat 22681189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 24785275 - 24785342
Alignment:
Q  143 ataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgtttt 210  Q
    |||| ||||||||| | ||||||||||||||| | ||||||||||||||| || ||  ||||||||||    
T  24785275 ataagctatcctagggagcttatgaaaataaactaaaaacaacttatgaaaatgtcctaagatgtttt 24785342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 1217864 - 1217790
Alignment:
Q  135 ctgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttt 209  Q
    ||||||| |||| ||||||| |||  ||||||||| ||| |||||||||||||||| |||| ||| ||| |||||    
T  1217864 ctgttttcataagctatccttgagaacttatgaaagtaagatgaaaacaacttatggacatgtcataagctgttt 1217790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 42745069 - 42745118
Alignment:
Q  160 gcttatgaaaataaaatgaaaacaacttatgaacatatcacaagatgttt 209  Q
    ||||||| |||||| ||||||||||||||||||||| ||| ||| |||||    
T  42745069 gcttatggaaataagatgaaaacaacttatgaacatgtcataagttgttt 42745118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 47513684 - 47513717
Alignment:
Q  160 gcttatgaaaataaaatgaaaacaacttatgaac 193  Q
    ||||||||||||||| ||||||||||||||||||    
T  47513684 gcttatgaaaataaattgaaaacaacttatgaac 47513717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 16790459 - 16790387
Alignment:
Q  118 gataaaataacatcaaactgtttttataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatg 190  Q
    |||||||||| |||||| | |||| |||| ||||| | ||  ||||||||||||||| |||||||| ||||||    
T  16790459 gataaaataaaatcaaattattttcataagctatcttggatagcttatgaaaataaactgaaaacagcttatg 16790387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 33883806 - 33883754
Alignment:
Q  143 ataatctatcctagagtgcttatgaaaataaaatgaaaacaacttatgaacat 195  Q
    |||| ||||| |||||  |||||||||||||  ||||||||||||||||||||    
T  33883806 ataagctatcttagagaacttatgaaaataagctgaaaacaacttatgaacat 33883754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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