View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_35 (Length: 309)
Name: NF19898_high_35
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 31950511 - 31950805
Alignment:
| Q |
1 |
acataaagtgtgtcttaagtcaaatagtaatttgtctatgtttacaaagattaattgaaataaaataaaggaagtaaataaacaaaaagcagctatagat |
100 |
Q |
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| T |
31950511 |
acataaagtgtgt-ttaagtcaaatagtaatttgtctatgtttacaaagattaattgaaataaaataaaggaagtaaataaacaaaaagcagctatagat |
31950609 |
T |
|
| Q |
101 |
atcaagtctttgagcaactctccaagaactcatctttgg--aatagcttccctgtgccgctttccaaccacacaaccagtgcaaataacaggggaatcct |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31950610 |
atcaagtctttgagcaactctccaagaactcatctttggggaatagcttccctgtgccgctttccaaccacacaaccagtgcaaataacaggggaatcct |
31950709 |
T |
|
| Q |
199 |
tgagcaccggtaatcctcatatcgtaggtatgtaagtaaaacattattactattgtaggattaagcatcaaaggtaattgacttcattgttgagtt |
294 |
Q |
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| T |
31950710 |
tgagcaccggtaatcctcatatcgtaggtatgtaagtaaaacattattactattgtaggattaagcatcaaaggtaattgacttcattgttgagtt |
31950805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 20632904 - 20632801
Alignment:
| Q |
120 |
ctccaagaactcatctttggaatagcttccctgtgccgctttccaaccacacaaccagtgcaaataacaggggaatccttgagcaccggtaatcctcata |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20632904 |
ctccaagaactcatctttggaatagcttccctgtgccgctttccaaccacacaaccagtgcaaataacaggggaatccttgagcaccagtaatcctcata |
20632805 |
T |
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| Q |
220 |
tcgt |
223 |
Q |
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|||| |
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| T |
20632804 |
tcgt |
20632801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 55319418 - 55319540
Alignment:
| Q |
104 |
aagtctttgagcaactctccaagaactca-----tctttggaatagcttccctgtgccgctttccaaccacacaaccagtgcaaataacaggggaatcct |
198 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55319418 |
aagtctttgagcaactctccaagaactcaactcgtctttgcaatagcttccctgtgccgctttccaaccacacaaccagtgcaaataac--gggaatcct |
55319515 |
T |
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| Q |
199 |
tgagcaccggtaatcctcatatcgt |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
55319516 |
tgagcaccggtaatcctcatatcgt |
55319540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 55319369 - 55319412
Alignment:
| Q |
1 |
acataaagtgtgtcttaagtcaaatagtaatttgtctatgttta |
44 |
Q |
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| T |
55319369 |
acataaaatgtgtcttaagtcaaatagtaatttgtctatgttta |
55319412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 55319622 - 55319658
Alignment:
| Q |
224 |
aggtatgtaagtaaaacattattactattgtaggatt |
260 |
Q |
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| T |
55319622 |
aggtatgtaagtaaaacattattactattgtaggatt |
55319658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 2779572 - 2779418
Alignment:
| Q |
45 |
caaagattaattgaaataaaataaaggaagtaaataaacaaaaagcagctatagatatcaagtctttgagcaactctccaagaactcatctttggaatag |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2779572 |
caaagattaattgaaataaaataaaggaagtaaataaacaaaaagctgatatagagatcaagtctttgagaaactctccaagaactcatctttggaatag |
2779473 |
T |
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| Q |
145 |
cttccctgtgccgctttccaaccacacaaccagtgcaaataacaggggaatccttgagcaccggtaatc |
213 |
Q |
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| T |
2779472 |
c--------------ttccaaccacacaaccagtgcaaataacaggggaatccttgagcactggtaatc |
2779418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 2778792 - 2778754
Alignment:
| Q |
256 |
ggattaagcatcaaaggtaattgacttcattgttgagtt |
294 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
2778792 |
ggattaaacatcaaaggtaattgacttcattgttgagtt |
2778754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 31959303 - 31959210
Alignment:
| Q |
101 |
atcaagtctttgagcaactctccaagaactcatctttggaatagcttccctgtgccgctttccaaccacacaaccagtgcaaataacaggggaa |
194 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
31959303 |
atcaagtctttgagaaactctccaagaactcttctttggaatagattccctgtgctgctttccaaccacacaacaagtgcaaataacaggggaa |
31959210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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