View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_high_38 (Length: 297)

Name: NF19898_high_38

Description: NF19898

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19898_high_38

[»] chr5 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 201; E-Value: 1e-110

Query Start/End: Original strand, 59 - 284

Target Start/End: Complemental strand, 3640585 - 3640360

Alignment:

Q	59	caagttaatcacttaaacacaacaatacttttgaaataaaaattatgtcaaaaattacaacaagtttaacctgtgttcaccaacaattaaagagactaat	158	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3640585	caagttaatcacttaaacacaacaatacttttgaaataaaaattatgtcaaaaattacaacaagtttaacctgtgttcaccaacaattaaagagactaat	3640486	T

Q	159	ctaccgaccatataggaaaataacaatccaggaattataaaagaatggtatttaaatcggtnnnnnnnggttggtctttaaataaagctaaaaatataat	258	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3640485	ctaccgaccatataggaaaataacaatccaggaattataaaagaatggtatttaaatcagtaaaaaaaggttggtctttaaataaagctaaaaatataat	3640386	T

Q	259	attgttgacaattctatgttgtatgt	284	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3640385	attgttgacaattctatgttgtatgt	3640360	T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 76 - 120

Target Start/End: Complemental strand, 22461998 - 22461954

Alignment:

Q	76	cacaacaatacttttgaaataaaaattatgtcaaaaattacaaca	120	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22461998	cacaaaaatacttttgaaatataaattatctcaaaaattacaaca	22461954	T

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