View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_43 (Length: 274)
Name: NF19898_high_43
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 25493814 - 25493614
Alignment:
| Q |
2 |
cagttaaataagaacaaaaaattcacctaaagacgctnnnnnnngaacagatgaagtattattggatcaaccaattcaagatcatcaaattaaaatccta |
101 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25493814 |
cagttaaataagaacacaaaattcacctaaagacgctcaaaaaggaacagatgaagtattattggatcaaccaattcaagatcatcaaattaaaatctta |
25493715 |
T |
|
| Q |
102 |
aaactaggtagatttgcctaatgaaacaagattgnnnnnnnnnnnnnnnnnnnnttgaaattcatcaatatctaacttgatttgcaacatcaagttttac |
201 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25493714 |
aaactagctagatttgcctaatgaaacaagattgaaataaaataaaaaacaaaattgaaattcatcaatatctaacttgatttgcaacatcaagttttac |
25493615 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
25493614 |
t |
25493614 |
T |
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