View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_49 (Length: 251)
Name: NF19898_high_49
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_49 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 11820809 - 11820696
Alignment:
| Q |
138 |
atctaacttcctatttaaagtaagtaacttataacttgttcggctaccaaagtccaaaagaagtaaagtaacatagccaagctaactaccagacttggat |
237 |
Q |
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| T |
11820809 |
atctaacttcctatttaaagtaagtaacttataacttgttaggctaccaaagtccaaaagaagtaaaataacatagccaagctaactaccagacttggat |
11820710 |
T |
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| Q |
238 |
ttactaactaattt |
251 |
Q |
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|||||||||||||| |
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| T |
11820709 |
ttactaactaattt |
11820696 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 11820981 - 11820937
Alignment:
| Q |
19 |
ggtgcatgaacaacgatttgccgtgccgtgaaaattctgctttaa |
63 |
Q |
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| T |
11820981 |
ggtgcatgaacaacgatttgccgtgccgtgaaaattctgctttaa |
11820937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 117
Target Start/End: Complemental strand, 11820824 - 11820793
Alignment:
| Q |
86 |
actgatgctaactacatctaacttcctattta |
117 |
Q |
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| T |
11820824 |
actgatgctaactacatctaacttcctattta |
11820793 |
T |
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