View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_high_6 (Length: 548)

Name: NF19898_high_6
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_high_6
NF19898_high_6
[»] chr1 (14 HSPs)
chr1 (15-530)||(1793500-1794016)
chr1 (394-530)||(2012753-2012889)
chr1 (395-530)||(2007270-2007408)
chr1 (398-510)||(2011276-2011388)
chr1 (388-530)||(2020509-2020651)
chr1 (411-503)||(3373532-3373624)
chr1 (253-329)||(2007511-2007587)
chr1 (159-227)||(2007641-2007708)
chr1 (253-329)||(2020712-2020788)
chr1 (394-501)||(3379557-3379664)
chr1 (251-332)||(2012992-2013074)
chr1 (86-162)||(2007731-2007807)
chr1 (474-506)||(3342075-3342107)
chr1 (411-503)||(6600959-6601051)
[»] chr2 (4 HSPs)
chr2 (394-504)||(20935257-20935367)
chr2 (22-66)||(20954211-20954255)
chr2 (22-66)||(20935971-20936014)
chr2 (22-66)||(39275112-39275156)
[»] chr4 (1 HSPs)
chr4 (437-515)||(21238295-21238373)


Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Complemental strand, 1794016 - 1793500
Alignment:
Q  15 caaaggcggaaagatagtatgcataagagagacatagagcatattaaaactcgacagactactcca--tgtcctgcctacacacaattgttacaaatcca 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||||||||||||||||    
T  1794016 caaaggaggaaagatagtatgcataagagagacatagagcatattaaaactcgacagactacttcacatgtcgtgcctacacacaattgttacaaatcca 1793917  T
Q  113 aaaatcaaaggggggaggttcgtacaaaaagggcagataaaaagtatattgattgataaaagatgaaaaagaaggtacatgagtctctcatttaaaggac 212  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1793916 aaaatcaaaggggggaggttcgtacaaaaaggacagataaaaagtatattgattgataaaagatgaaaaagaaggtacatgagtctctcatt-aaaggac 1793818  T
Q  213 tctactacactaaattgagcctgactcataagttctatttgtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793817 tctactacactaaattgagcctgactcataagttctatttgtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaag 1793718  T
Q  313 gcactagacaaatactttaaggcagacaaagtttgcaaattctagaactgaaaaacatgacacaaatgcataaacaaagttaagccaaactaaatgatta 412  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |    
T  1793717 gcactagacaaatactttaagccagacaaagtttgcaaattctagaactgaaaaacatgacacaaaagcataaacaaagtcaagccaaactaaatgagca 1793618  T
Q  413 ctcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaa 512  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793617 ctcactaatatatgtagttctttaagattaggcgagcttctaaacacgcatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaa 1793518  T
Q  513 gatatgttatattgatac 530  Q
    ||||||||||||||||||    
T  1793517 gatatgttatattgatac 1793500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 394 - 530
Target Start/End: Complemental strand, 2012889 - 2012753
Alignment:
Q  394 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 493  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| | |    
T  2012889 aagccaaactaaatgagtactcacaaatatatttaattctttaagattaggcgagcttctgaacacacatagagcagttgaaatttctttcaagtcgtag 2012790  T
Q  494 aagtttatgcttaaccaaagatatgttatattgatac 530  Q
    |||||||| |||||||||||||| |||| ||| ||||    
T  2012789 aagtttatacttaaccaaagatacgttagattaatac 2012753  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 395 - 530
Target Start/End: Complemental strand, 2007408 - 2007270
Alignment:
Q  395 agccaaactaaatgatta---ctcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcat 491  Q
    ||||||||||||||| ||   ||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||    
T  2007408 agccaaactaaatgagtagtactcacaaatatatttaattctttaagattaggcgagctcctgaacacacatagagcagttgaaatttccttaaagtcat 2007309  T
Q  492 tgaagtttatgcttaaccaaagatatgttatattgatac 530  Q
     ||||||||| || |||||||||||||||| ||| ||||    
T  2007308 agaagtttatactaaaccaaagatatgttagattaatac 2007270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 398 - 510
Target Start/End: Complemental strand, 2011388 - 2011276
Alignment:
Q  398 caaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagt 497  Q
    |||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||    
T  2011388 caaagtaaatgagtactcacaaatatttttagttctttaagattaggcgagcttctgaacacacttagagcagttgaaatttccttcaactcattgaagt 2011289  T
Q  498 ttatgcttaacca 510  Q
    |||| ||||||||    
T  2011288 ttatacttaacca 2011276  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 388 - 530
Target Start/End: Complemental strand, 2020651 - 2020509
Alignment:
Q  388 aaagttaagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaag 487  Q
    ||||| ||| |||| ||||||| ||||||| | ||| | ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||    
T  2020651 aaagtcaagtcaaagtaaatgagtactcacaattatttctagttttttaagattaggcgagcttctgaacacacatagagcagttgaaatttccttaaag 2020552  T
Q  488 tcattgaagtttatgcttaaccaaagatatgttatattgatac 530  Q
    |||| ||||||||| || |||||||||||||||| ||| ||||    
T  2020551 tcatagaagtttatactaaaccaaagatatgttagattaatac 2020509  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 411 - 503
Target Start/End: Complemental strand, 3373624 - 3373532
Alignment:
Q  411 tactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgc 503  Q
    ||||||| ||||| | || || |||||||||||| |||||||| | ||  || ||||||||||||||||||||||||||||||||||||||||    
T  3373624 tactcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttcaagtcattgaagtttatgc 3373532  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 2007587 - 2007511
Alignment:
Q  253 gtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaaggcactagacaaatactt 329  Q
    ||||||||||||||||||||||||||   || |||||||||| |||||  |||||||||||||||| | ||||||||    
T  2007587 gtaactcaagtgtacaagttttagaaaataatttccaatactggattgggaacttgaaaggcactaaaaaaatactt 2007511  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 2007708 - 2007641
Alignment:
Q  159 tattgattgataaaagatgaaaaagaaggtacatgagtctctcatttaaaggactctactacactaaat 227  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||| |||  |||||| ||||||||    
T  2007708 tattgattgataaa-gatgaaaaagaagatacatgagtctctgatttatagggttctactgcactaaat 2007641  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 2020788 - 2020712
Alignment:
Q  253 gtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaaggcactagacaaatactt 329  Q
    |||||||||||||||||||||||||| | |||||||||||||| | ||  ||||| ||| | |||| ||||||||||    
T  2020788 gtaactcaagtgtacaagttttagaaactaacttccaatactaaactgggaactttaaatgtactaaacaaatactt 2020712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 501
Target Start/End: Complemental strand, 3379664 - 3379557
Alignment:
Q  394 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 493  Q
    |||||||||||||| | ||||||| ||||| |  | || |||||| ||||| |||||||| | ||  || || ||||| ||||||||||||||| |||||    
T  3379664 aagccaaactaaataagtactcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttcaagacattg 3379565  T
Q  494 aagtttat 501  Q
    ||||||||    
T  3379564 aagtttat 3379557  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 2013074 - 2012992
Alignment:
Q  251 ttgtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttg-aaaggcactagacaaatactttaa 332  Q
    ||||| |||||||| |||| |||||||| | ||||||||||||||||||   |||| | |||||||||| |||||||||||||    
T  2013074 ttgtagctcaagtgcacaaattttagaaactaacttccaatactagattaggaactagaaaaggcactaaacaaatactttaa 2012992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 2007807 - 2007731
Alignment:
Q  86 tgcctacacacaattgttacaaatccaaaaatcaaaggggggaggttcgtacaaaaagggcagataaaaagtatatt 162  Q
    ||||||||  ||||||||||||||| | ||||||||||||| ||||| ||| | | |||  | ||||||||||||||    
T  2007807 tgcctacatgcaattgttacaaatctataaatcaaagggggaaggtttgtatacataggaaaaataaaaagtatatt 2007731  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 506
Target Start/End: Complemental strand, 3342107 - 3342075
Alignment:
Q  474 aaatttccttcaagtcattgaagtttatgctta 506  Q
    |||||| ||||||||||||||||||||||||||    
T  3342107 aaattttcttcaagtcattgaagtttatgctta 3342075  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 503
Target Start/End: Original strand, 6600959 - 6601051
Alignment:
Q  411 tactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgc 503  Q
    ||||||||||||| |  ||||||   |||||||| |||||||| || |  || ||||||||||||||||||||  | |||| |||||||||||    
T  6600959 tactcaccaatatttcgagttctcgtagattaggtgagcttctgaaaaggcaaagagcagctgaaatttcctttgaatcatagaagtttatgc 6601051  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 394 - 504
Target Start/End: Complemental strand, 20935367 - 20935257
Alignment:
Q  394 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 493  Q
    |||| ||||||||||| ||||||| ||||| | || || |  ||||||||| |||||||| | ||  || |||||||| ||||||||||||||||||| |    
T  20935367 aagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttcaagtcatcg 20935268  T
Q  494 aagtttatgct 504  Q
    |||||||||||    
T  20935267 aagtttatgct 20935257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 20954255 - 20954211
Alignment:
Q  22 ggaaagatagtatgcataagagagacatagagcatattaaaactc 66  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  20954255 ggaaagatagtatgcataagagggacatagagcatattaaaactc 20954211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 20936014 - 20935971
Alignment:
Q  22 ggaaagatagtatgcataagagagacatagagcatattaaaactc 66  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  20936014 ggaaagatagtatgcataaga-aggcatagagcatattaaaactc 20935971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 39275156 - 39275112
Alignment:
Q  22 ggaaagatagtatgcataagagagacatagagcatattaaaactc 66  Q
    |||||||| |||||||||||||||||||| | | |||||||||||    
T  39275156 ggaaagattgtatgcataagagagacatataacctattaaaactc 39275112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 515
Target Start/End: Complemental strand, 21238373 - 21238295
Alignment:
Q  437 agattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagat 515  Q
    |||||||| |||||||| | ||  || |||||||| || ||||||||||||||||||||||||||| ||||| ||||||    
T  21238373 agattaggtgagcttctgagcaagcagagagcagccgagatttccttcaagtcattgaagtttatgtttaacaaaagat 21238295  T

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