View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_64 (Length: 226)
Name: NF19898_high_64
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 5569201 - 5569004
Alignment:
| Q |
12 |
attattctactagttgtgatgatgtgtcacattttttgacacatcagctgcatatgtggtaccatttcttcaccatattcttatacatgttatcaaggac |
111 |
Q |
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| T |
5569201 |
attattctactagttgtgatgatgtgtcacattttttgacaaatcagctgcatatgtggtaccatttattcaccatattcttatacatgttatcaaggac |
5569102 |
T |
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| Q |
112 |
ctaagtgacaaataacattagcacaggcacggatcctctccaatcaccgaagggtccagtggaatcccagcc-ccccaaccatagatttagctcactt |
208 |
Q |
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| T |
5569101 |
ctaagtgacaaataacattagcacaggcacggatcctctccaatcaccgaagggtccagtggaatcccagcccccccaaccatagatttagctcactt |
5569004 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 43027211 - 43027173
Alignment:
| Q |
142 |
ggatcctctccaatcaccgaagggtccagtggaatccca |
180 |
Q |
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| T |
43027211 |
ggatcctctccaatcactggagggtccagtggaatccca |
43027173 |
T |
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