View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19898_high_7 (Length: 536)

Name: NF19898_high_7
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19898_high_7
NF19898_high_7
[»] chr3 (5 HSPs)
chr3 (205-324)||(51306211-51306330)
chr3 (115-209)||(51308963-51309057)
chr3 (19-108)||(51309663-51309751)
chr3 (63-105)||(3433053-3433095)
chr3 (66-107)||(31153319-31153360)
[»] chr2 (3 HSPs)
chr2 (144-257)||(31782753-31782879)
chr2 (62-105)||(5552276-5552319)
chr2 (63-107)||(44277839-44277883)
[»] chr1 (3 HSPs)
chr1 (129-196)||(19513249-19513316)
chr1 (242-289)||(19514255-19514302)
chr1 (63-107)||(35617087-35617131)
[»] scaffold0578 (2 HSPs)
scaffold0578 (129-195)||(9623-9689)
scaffold0578 (242-289)||(8637-8684)
[»] chr4 (3 HSPs)
chr4 (66-107)||(6076608-6076649)
chr4 (63-107)||(30599904-30599948)
chr4 (70-107)||(37977510-37977547)
[»] chr5 (1 HSPs)
chr5 (64-105)||(15072057-15072098)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 51306330 - 51306211
Alignment:
Q  205 aaaactttcattttgatggttccattgattttcaacccacccacactttcttcttgtatctagaactctccaatctgtttttctttcctcacccaaatcc 304  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51306330 aaaacattcattttgatggttccattgattttcaacccacccacactttcttcttgtatctagaactctccactctgtttttctttcctcacccaaatcc 51306231  T
Q  305 agcgataaaacaatcaccat 324  Q
    ||||||| ||||||||||||    
T  51306230 agcgatacaacaatcaccat 51306211  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 51309057 - 51308963
Alignment:
Q  115 aaatgatacatacgtacagaaatataataataaaaaattcattaagaattaatggaaccaatcgacacaattttgtaataaaataattaaaaaac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51309057 aaatgatacatacgtacagaaatataataataaaaaattcattaagaattaatggaaccaatcgacacaattttgtaataaaataattaaaaaac 51308963  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 51309751 - 51309663
Alignment:
Q  19 aaattagggcttttaagtgatggatacatcatacaagagccacactaagagcatccacgattgagaccctcaaattgaaggtcttaaaca 108  Q
    ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51309751 aaattaggg-ttttaagtgatggatacatcctacacgagccacactaagagcatccacaattgagaccctcaaattgaaggtcttaaaca 51309663  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 3433095 - 3433053
Alignment:
Q  63 ctaagagcatccacgattgagaccctcaaattgaaggtcttaa 105  Q
    |||||||||||||| || |||| ||||||||||||||||||||    
T  3433095 ctaagagcatccacaatggagatcctcaaattgaaggtcttaa 3433053  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 31153319 - 31153360
Alignment:
Q  66 agagcatccacgattgagaccctcaaattgaaggtcttaaac 107  Q
    ||||||||||| || ||||||||||| |||||||||||||||    
T  31153319 agagcatccacaatggagaccctcaatttgaaggtcttaaac 31153360  T

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Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 144 - 257
Target Start/End: Original strand, 31782753 - 31782879
Alignment:
Q  144 ataaaaaattcattaagaattaatggaaccaatcgacacaattttgtaataaaataa--------ttaaaaaactttcattttga-----tggttccatt 230  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||| || ||| |||     ||||||| ||    
T  31782753 ataaaaaattcattaagaattaatggaaccaattgacacaattttgtaataaaataaataaataattaaaaaacattaattgtgaattaatggttccgtt 31782852  T
Q  231 gattttcaacccacccacactttcttc 257  Q
    ||||||||||||| |||||||||||||    
T  31782853 gattttcaacccatccacactttcttc 31782879  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 5552276 - 5552319
Alignment:
Q  62 actaagagcatccacgattgagaccctcaaattgaaggtcttaa 105  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  5552276 actaagagcatccacaatggagaccctcaaattgaagatcttaa 5552319  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 44277883 - 44277839
Alignment:
Q  63 ctaagagcatccacgattgagaccctcaaattgaaggtcttaaac 107  Q
    |||||||||||||| || |||| |||||| |||||||||||||||    
T  44277883 ctaagagcatccacaatggagatcctcaatttgaaggtcttaaac 44277839  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 19513249 - 19513316
Alignment:
Q  129 tacagaaatataataataaaaaattcattaagaattaatggaaccaatcgacacaattttgtaataaa 196  Q
    |||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  19513249 tacaaaaatataatagtaaaaaattcattaagaattaatggaatcaattgacacaattttataataaa 19513316  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 19514255 - 19514302
Alignment:
Q  242 cacccacactttcttcttgtatctagaactctccaatctgtttttctt 289  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  19514255 cacccacactttctacttgtatctataactctccactctgtttttctt 19514302  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 35617131 - 35617087
Alignment:
Q  63 ctaagagcatccacgattgagaccctcaaattgaaggtcttaaac 107  Q
    |||||||||||||| || ||||| ||||| |||||||||||||||    
T  35617131 ctaagagcatccacaatggagacgctcaagttgaaggtcttaaac 35617087  T

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Target: scaffold0578 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 9689 - 9623
Alignment:
Q  129 tacagaaatataataataaaaaattcattaagaattaatggaaccaatcgacacaattttgtaataa 195  Q
    |||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  9689 tacaaaaatataatagtaaaaaattcattaagaattaatggaatcaattgacacaattttataataa 9623  T

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Target: scaffold0578; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 8684 - 8637
Alignment:
Q  242 cacccacactttcttcttgtatctagaactctccaatctgtttttctt 289  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  8684 cacccacactttctacttgtatctataactctccactctgtttttctt 8637  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 6076608 - 6076649
Alignment:
Q  66 agagcatccacgattgagaccctcaaattgaaggtcttaaac 107  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  6076608 agagcatccacaatggagaccctcaaattgaaggtcttaaac 6076649  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 30599948 - 30599904
Alignment:
Q  63 ctaagagcatccacgattgagaccctcaaattgaaggtcttaaac 107  Q
    |||||||||||||| || ||||||||||| |||||||||||||||    
T  30599948 ctaagagcatccacaatggagaccctcaatttgaaggtcttaaac 30599904  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 37977510 - 37977547
Alignment:
Q  70 catccacgattgagaccctcaaattgaaggtcttaaac 107  Q
    ||||||| || |||||||||||||||||||||||||||    
T  37977510 catccacaatggagaccctcaaattgaaggtcttaaac 37977547  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 15072057 - 15072098
Alignment:
Q  64 taagagcatccacgattgagaccctcaaattgaaggtcttaa 105  Q
    ||||||||||||| || |||||||||||||| ||||||||||    
T  15072057 taagagcatccacaatggagaccctcaaattaaaggtcttaa 15072098  T

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