View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_high_8 (Length: 532)
Name: NF19898_high_8
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Original strand, 25680689 - 25681195
Alignment:
| Q |
17 |
atattttctattttgctttcactcattgtattggtcaaatcacaaaatatatacttggaccatatatttgatttattgttccatgtatcaaattattatg |
116 |
Q |
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| T |
25680689 |
atattttctattttgctttcactcattgtattggtcaaatcacaaaatatatacttggaccatatatttgatttattgttccatgtatcaaattattatg |
25680788 |
T |
|
| Q |
117 |
catat--------atatcttgatgggctagttaaacccaaccctcttggaactaatcaaggtgataagatagttcattaatgtccaaaaacaatgcaaag |
208 |
Q |
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| T |
25680789 |
catatatatatatatatcttgatgagctagttaaacccaaccctcttggaactaatcaaggtgataagatagttcattaatgtccaaaaacaatgcaaag |
25680888 |
T |
|
| Q |
209 |
gtcagaactagttgagtccctacctatgaaaagaaagtctaatatatcggccacttaacatttttgtgtacactattatcaaagataaatggtccatgaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25680889 |
gtcagaactagttgagtccctacctatgaaaagaaagtctaatatatcggccacttaacatttttgtgtacactattatcaaagataaatggtccatgaa |
25680988 |
T |
|
| Q |
309 |
caaagacaagtaatatacctcaagtatatagacttaaaagactatatggtccccactataatttgaactttgaaggaacaataacagaaattatgaaatt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25680989 |
caaagacaagtaatatacctcaagtatatagacttaaaagactatatggtccccactataatttgaactttgaaggaacaataaccgaaattatgaaatt |
25681088 |
T |
|
| Q |
409 |
gcataggggaggaaaacttttttgaaaattaattggcacgaactttctgatggtgtttcttatttggcatgtgtgttgggactatacctttcaatctgaa |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25681089 |
gcataggggaggaaaacttttttgaaaattaattggcacgaactttctgatggtgtttctaatttggcatgtgtgttgggactatacctttcaatctgaa |
25681188 |
T |
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| Q |
509 |
ttattgc |
515 |
Q |
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| T |
25681189 |
ttattgc |
25681195 |
T |
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