View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_11 (Length: 512)
Name: NF19898_low_11
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 120 - 512
Target Start/End: Complemental strand, 41336093 - 41335701
Alignment:
| Q |
120 |
cacctctaatttcatctctaagtataagttagaggtgtaaaaattagagatcaatttaaatannnnnnnncatctctaattactgccaataattcaacct |
219 |
Q |
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| T |
41336093 |
cacctctaatttcatctctaagtataagttagaggtgtaaaaattagagatcaatttaaatattttttttcatctctaattactgccaataattcaactt |
41335994 |
T |
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| Q |
220 |
tttctagcagtgcaaatgatgaaagttataacagacgactagccgaagaagatgcaagaccatgaaaatcattccatgaattattgtaatggttgttatt |
319 |
Q |
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| T |
41335993 |
tttctagcagtgcaaacgatgaaagttataacagacgactagccgaagaagatgcaagaccatgaaaatcattccatgaattattgtaatggttgttatt |
41335894 |
T |
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| Q |
320 |
ctctgacatattcattggagatctaagcagattaaaacctccgttgtgttccgatttaaccgatgcaggcatcaaagtagtaaccctagaagtagttgtt |
419 |
Q |
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| T |
41335893 |
ctctgacatattcattggagatctaagaagattaaaacctccgttgtgttccgatttaaccgatgcaggcatcaaagtagtaaccctagaagtagttgtt |
41335794 |
T |
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| Q |
420 |
ggttcaacaatttcactttgaaatgggaaagaaacatttgaagtacttgaatcaaagccattattcatgaaaggaaactgctgaaatctccac |
512 |
Q |
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| T |
41335793 |
ggttcaacaatttcactttgaaatgggaaagaaacatttgaagtacttgaatcaaagccattattcatgaaaggaaactgctgaaatctccac |
41335701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41336212 - 41336170
Alignment:
| Q |
1 |
tttgataactgatgataagcaagtagttacaacagggatgatg |
43 |
Q |
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| T |
41336212 |
tttgataactgatgataagcaaagagttacaacagagatgatg |
41336170 |
T |
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