View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_13 (Length: 465)
Name: NF19898_low_13
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 46 - 465
Target Start/End: Original strand, 45565492 - 45565911
Alignment:
| Q |
46 |
cagcacctgcgcctctgctaactgaatcccacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaat |
145 |
Q |
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| T |
45565492 |
cagcacctgcgcctctgctaactgaatcccacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaat |
45565591 |
T |
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| Q |
146 |
ggggacatccatttgaacatagaactcctctctcttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgtta |
245 |
Q |
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| T |
45565592 |
ggggacatccatttgaacatggaactcctctcttttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgtta |
45565691 |
T |
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| Q |
246 |
gagaattcgcaaaccccacattctcatccattcgcccaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgt |
345 |
Q |
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| T |
45565692 |
cagaattcgcaaaccccacattctcatccattcaccgaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgt |
45565791 |
T |
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| Q |
346 |
tgcgccacaaccaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtgt |
445 |
Q |
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| T |
45565792 |
tgcgccacaaccaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtat |
45565891 |
T |
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| Q |
446 |
caccatccttaagccaaatc |
465 |
Q |
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| T |
45565892 |
caccatccttaagccaaatc |
45565911 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 45286972 - 45286940
Alignment:
| Q |
117 |
ccaatcgttctcatagtttgtttcacaatgggg |
149 |
Q |
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| T |
45286972 |
ccaatcgttctcgtagtttgtttcacaatgggg |
45286940 |
T |
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