View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_18 (Length: 436)
Name: NF19898_low_18
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 27 - 417
Target Start/End: Original strand, 13634543 - 13634912
Alignment:
| Q |
27 |
ggtttttgcacaacatgatattgattgaatctacgtttgacattgattctcaacaatataaagaattgtgatggcaattgttagagataaaaccctgatt |
126 |
Q |
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| T |
13634543 |
ggtttttgcacaacatgatattgattgaatctacgttcgactttgattctcaacaatataaagaattgtgatggcaattgttagtgataaaaccctgatt |
13634642 |
T |
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| Q |
127 |
ataattaggattttaaatagagttttgtgagtgcgatctagaccacaacacaacagttttttatgttatcgaaaccactaagaatcttcgattgatgtca |
226 |
Q |
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| T |
13634643 |
ataattaggattttaaatagagttttgtgagtgcgatctagaccacaacacaacagttttttatgttatcgaaaccactaagaatcttcgattgatgtcg |
13634742 |
T |
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| Q |
227 |
catttgactgtgattcttcacaatatcaaggatcacagcgacctcaatcttaaccacgtctaccttttaaaaccctaatgataatgatgccatgataaag |
326 |
Q |
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| T |
13634743 |
catttgactgtgattcttcacaatatcaaggatcacagtga---------------------ccttttaaaaccctaatgataatgatgccatgataaag |
13634821 |
T |
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| Q |
327 |
ataaagataaaaataaggagcactacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatggagcttggact |
417 |
Q |
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| T |
13634822 |
ataaagataaaaataaggagcactacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatggagcttggact |
13634912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 37 - 417
Target Start/End: Complemental strand, 27532565 - 27532167
Alignment:
| Q |
37 |
caacatgatattgattgaatctacgtttgacattgattctcaacaatataaagaattgtgatggcaattgttagagataaaaccctgattataattagga |
136 |
Q |
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| T |
27532565 |
caacatgacattgattgaatctacatttgattacgattcctaacaatatcaagaattgtgatggcaatcgttagtgataaaactccgattataat-agga |
27532467 |
T |
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| Q |
137 |
ttttaaatagagttttgtgagtgcgatctagaccacaacacaacagttttttatgttatcgaaaccactaagaatcttcgattgatgtcacatttgactg |
236 |
Q |
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| T |
27532466 |
ttttaaatagagttttgtgagtgtgatcaaaaccacgacacaacaattttttatgttgtcgaaaccactatgaatcttcgattgaggtcgcatttgattg |
27532367 |
T |
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| Q |
237 |
tgattcttcacaatatcaaggatcacagcgacctcaatcttaaccacgtctaccttttaaaaccctaatgataatgatgc-------------------- |
316 |
Q |
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| T |
27532366 |
tgattcttcacaatatcaaggatcacggtgacatcaatcttaacgaagtctactttttaaaaccctaatgataatgatgccatgcagatgataatgatgt |
27532267 |
T |
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| Q |
317 |
catgataaagataaagataaaaataaggagcactacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatggagcttggac |
416 |
Q |
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| T |
27532266 |
catgataaagataaagataaaaa-aaggagcactacctgtccaaggcttccaaatacttctgcttcctaatctgaaaaaacattttcatggagctttgac |
27532168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 399
Target Start/End: Original strand, 13644290 - 13644341
Alignment:
| Q |
348 |
actacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacat |
399 |
Q |
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| T |
13644290 |
actacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacat |
13644341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 410
Target Start/End: Original strand, 13689792 - 13689853
Alignment:
| Q |
349 |
ctacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatggagc |
410 |
Q |
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| T |
13689792 |
ctacctctccaagacttcataatatttttgcttcctaatctcaaagagcattttcatggagc |
13689853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 47414833 - 47414882
Alignment:
| Q |
356 |
tccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcat |
405 |
Q |
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| T |
47414833 |
tccaacgcttcaagatacttctgcttcctaatctcgaagaaaatcttcat |
47414882 |
T |
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