View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_2 (Length: 875)
Name: NF19898_low_2
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_2 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 774; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 38 - 875
Target Start/End: Complemental strand, 1350676 - 1349839
Alignment:
| Q |
38 |
tttattgaatttctatgaataagataagagtggaagaggaagggttgaatcttcaactgcaaatctcaccaataatatctattcaaataaaattgcctga |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350676 |
tttattgaatttctatgaataagataagagtggaagaggaagggttgaatcttcaactgcaaatctcaccaataatatctattcaaataaaattgcctga |
1350577 |
T |
|
| Q |
138 |
gacttttaatatgatatatatgaatgaacataaattagcaatcaatatttatttattaattacaatatactaattgtgtcatatgatgtgctggactgga |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350576 |
gacttttaatatgatatatatgaatgaacataaattagcaatcaatatttatttattaattacaatatactaattgtgtcatatgatgtgctggactgga |
1350477 |
T |
|
| Q |
238 |
ctttacctaccatctatttacatgtttatccacacacatatatgtatgtaataatgagctgaaaatatatattttttctttcattcttccagaaaaccag |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1350476 |
ctttacctaccatctatttacatgtttatccacacacatatatgtatgtaataatgagctgaaaatatatattttttctttcattcttctagaaaaccag |
1350377 |
T |
|
| Q |
338 |
taggtctgagaagacattttggtacttactaaactgattaactatgtagcattgagatgtgtttggtgtccgacattgacatatgtggttacattcaaat |
437 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1350376 |
taggtctgagaagacattttggtacttactacactgattaactatgtagcactgagacgtgtttggtgtccgacattgacatatttggttacattcaaat |
1350277 |
T |
|
| Q |
438 |
atttcacattttctaattttatcaatgtcaaatgtgtcaatatcaatgtcgtatccatattttgttgtcggtcgtaattagttaaggcaccacagtttgt |
537 |
Q |
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| T |
1350276 |
atttcacattttctaattttatcaatgtcaaatgtgtcaatatcaatttcgtatccatattttgttgtcggtcgtaattagttaaggcaccacagtttgt |
1350177 |
T |
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| Q |
538 |
ttgccttcaatcttgactccaacaattctcttccnnnnnnnntgttctctccaaaccctatccatttgctcaattggaacattcttggtttctggtaaca |
637 |
Q |
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| T |
1350176 |
ttgccttcaatcttgtctccaacaattctcttccaaaaaaaatgttctctccaaaccctatccatttgctcaattggaacattcttggtttctggtaaca |
1350077 |
T |
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| Q |
638 |
gaaaataaacaaacactgtcatcataaccacccaacctccaaaaaagaagaaagttccatacttaaaatgacacagcatgctaagaaaagtttgagcaac |
737 |
Q |
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| T |
1350076 |
gaaaataaacaaacactgtcataataaccacccaacctccaaaaaagaagaaagttccatacttgaaatgacacagcatgctaagaaaagtttgagcaac |
1349977 |
T |
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| Q |
738 |
aatgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggc |
837 |
Q |
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| T |
1349976 |
aatgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggc |
1349877 |
T |
|
| Q |
838 |
ccccatgaccaagcaaatccggcgacataaatgcatat |
875 |
Q |
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| T |
1349876 |
ccccatgaccaagcgaatccggcgacataaatgcatat |
1349839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 641 - 875
Target Start/End: Complemental strand, 1357030 - 1356796
Alignment:
| Q |
641 |
aataaacaaacactgtcatcataaccacccaacctccaaaaaagaagaaagttccatacttaaaatgacacagcatgctaagaaaagtttgagcaacaat |
740 |
Q |
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|||| |||||||| ||||||| ||||||||||||||||| ||||||||| | ||| |||| || || || |||||| ||||| || ||||||||||| |
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| T |
1357030 |
aatacacaaacacagtcatcaccaccacccaacctccaaagaagaagaaaatcccagacttgaagtggcaaagcatggatagaaatgtctgagcaacaat |
1356931 |
T |
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| Q |
741 |
gaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggcccc |
840 |
Q |
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| T |
1356930 |
aaaagtgaagagaaaactcactgctactgtgatgctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccc |
1356831 |
T |
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| Q |
841 |
catgaccaagcaaatccggcgacataaatgcatat |
875 |
Q |
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| T |
1356830 |
cacgaccatccaaacccagcaacataaatacatat |
1356796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 1353847 - 1353798
Alignment:
| Q |
74 |
aggaagggttgaatcttcaactgcaaatctcaccaataatatctattcaa |
123 |
Q |
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| T |
1353847 |
aggaaggattgaatcttcaattgcaaatctcaccaatcatatctattcaa |
1353798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 792 - 872
Target Start/End: Complemental strand, 36202764 - 36202684
Alignment:
| Q |
792 |
aatctccaacggaaaaatctcactaggaaccaaccatcctaatggcccccatgaccaagcaaatccggcgacataaatgca |
872 |
Q |
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| T |
36202764 |
aatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaatcctgctacgtaaatgca |
36202684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 739 - 848
Target Start/End: Complemental strand, 48332905 - 48332796
Alignment:
| Q |
739 |
atgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggcc |
838 |
Q |
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|||||||| || |||| |||||| |||||||| ||||||||| | || |||| || || |||||||| |||||||| || || |||||||| ||||| |
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| T |
48332905 |
atgaaagtgaagagaaggttcacagcaactgttatactttgccctgccgatcggatttctaacggaaatatctcacttgggactgtccatcctagtggcc |
48332806 |
T |
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| Q |
839 |
cccatgacca |
848 |
Q |
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|||||||||| |
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| T |
48332805 |
cccatgacca |
48332796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 738 - 848
Target Start/End: Complemental strand, 48345501 - 48345391
Alignment:
| Q |
738 |
aatgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggc |
837 |
Q |
| |
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||||||||| ||||||| ||| ||||||||||| ||||||||| | || |||| || || || ||||| |||||||| || || |||||| | |||| |
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| T |
48345501 |
aatgaaagtgaacagaaggtttactgcaactgtgatactttgccctgccgatcggatttctaatggaaatatctcacttgggactgtccatccaagtggc |
48345402 |
T |
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| Q |
838 |
ccccatgacca |
848 |
Q |
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| T |
48345401 |
ccccatgacca |
48345391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 739 - 848
Target Start/End: Complemental strand, 20427 - 20318
Alignment:
| Q |
739 |
atgaaagtaaacagaaagttcactgcaactgtaatactttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggcc |
838 |
Q |
| |
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|||||||| || |||| |||||| |||||||| ||||||||| | || |||| || || |||||||| |||||||| || || |||||||| ||||| |
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| T |
20427 |
atgaaagtgaagagaaggttcacagcaactgttatactttgccctgccgatcggatttctaacggaaatatctcacttgggactgtccatcctagtggcc |
20328 |
T |
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| Q |
839 |
cccatgacca |
848 |
Q |
| |
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|||||||||| |
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| T |
20327 |
cccatgacca |
20318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 774 - 845
Target Start/End: Complemental strand, 43380894 - 43380823
Alignment:
| Q |
774 |
actttgcgcggctgatctaatctccaacggaaaaatctcactaggaaccaaccatcctaatggcccccatga |
845 |
Q |
| |
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|||||| || ||||| || ||||| || ||||||| |||||| ||||||||||||||||| || |||||||| |
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| T |
43380894 |
actttgtgcagctgaccttatctctaatggaaaaagctcacttggaaccaaccatcctaagggtccccatga |
43380823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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