View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19898_low_26 (Length: 367)
Name: NF19898_low_26
Description: NF19898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19898_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 156 - 351
Target Start/End: Original strand, 29693446 - 29693638
Alignment:
| Q |
156 |
cgtattcgcacgattaaacaaaacagacaaacaagtacgactctgtttttggtctgaacgctggtttctcataaataacttgcagacaatggatcaataa |
255 |
Q |
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| T |
29693446 |
cgtattcgcacgataaaacaaaacagacaaacaagtacgactctgtttttggtctgaacgctggtttctcataaataacttgctgacaatggatcaataa |
29693545 |
T |
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| Q |
256 |
ttcaatcaagattagaccttgaaaaatacataaaccacgttgtaccttgtattattatgaatcatgttatttattagtaggagctttctcaaaaac |
351 |
Q |
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| T |
29693546 |
ttcaatcaagattagaccttgaaaaatatataaaccacattgtaccttgtattattatgaatcatgttatttat---taggagctttctcaaaaac |
29693638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29693291 - 29693365
Alignment:
| Q |
1 |
atgttaccaatggaatcaaaaaattatggcattcaagcattttccataaatagagtatatggtaatttcttcttc |
75 |
Q |
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| T |
29693291 |
atgttatcaatggcatcaaaaaattatggcattcaagcattttccataaatagagtatatggtaattccttcttc |
29693365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29768345 - 29768304
Alignment:
| Q |
1 |
atgttaccaatggaatcaaaaaattatggcattcaagcattt |
42 |
Q |
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| T |
29768345 |
atgttaccaatggcatcaaaaaattatggcatccaagtattt |
29768304 |
T |
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